Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu8g1801 | ATGTCAGGAGGAGGATGCAGCATAGTGTGGTTTAGGAGAGATCTGAGGGTAGAGGATAACCCGGCACTGGCTGCAGGAGTGCGAGCTGGAGCTGTGATTGCTGTTTTCATATGGGCTCCAGAAGAAGAGGGTCAATACTACCCAGGTAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCCCTAATCACCAAGCGCTCCACTAATAGTGTTTCTTCTCTATTGGAGGTCATTAAGTCAACAGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGAACAAAGGAGGTTCTGACTGCTCAAGGCATTACCGTACGTTCATTCAACTCAGATTTATTGTATGAACCATGGGATGTGAATGATGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAGAGAATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATACATTGGTGTTTGAAGACGAATTAGAGAAGGCAAGCAATGCGCTTCTTTCTCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGGCTGCATTCGTAAATGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCTCCACATTTGCACTTTGGTGAGGTGAGTGTAAAGAAAGTGTTCCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGGAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCGAGGTATATCAGTTTCAACCACCCCTACAGTCATGAGAGGCCCCTTCTGGGCCACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCAAGTTTCTTTGTGAAGGTGCTGCAGCTTCCCTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCCCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGATCGAATAGATAATCCACAGTTTGAGGGGTATAAATGTGACCCAAATGGAGAATATGTTCGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCGTGGAATGCACCAGAGTATGTACTGCAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTGGGAATAGATGCTGCAAAAGTTAGATTACAAGAAGCACTTATACAAACGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACCGAGGAAGGGCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCCCAAGACACACTCATGGAAGAAAGGCCTGCTGAACCTGTTAGGAACAACCCACCTCATGGTACTCGGCGCTATGAGGATCAGATGGTCCCAAGTATGACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAACATCTTCAGACCTTCGAAATTCAGCAGCAGACAACAGAGCAGAAGTTCCTACAAATGTGACCACACAACAAAATGCAAGAGAGACAGTGAATCAAGGAGAGCTGCTGAATGTAAATAGAAACACTCGAGTACAGAATAATGCTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAATTAGTACTAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTTTGGTCTCCCCCAGCATCTAACTTTTCAGAACAATATGCAGATGATGAAAATGGTATTGGAGCCAGTTCATCTTACTTGCAGAGGCAGCATCCTCAGTCTCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTAA | 2049 | 0.4592 | MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRTKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDTLVFEDELEKASNALLSRAWSPGWSNADKALAAFVNGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQTWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDTLMEERPAEPVRNNPPHGTRRYEDQMVPSMTSSHVRVEEEETSSDLRNSAADNRAEVPTNVTTQQNARETVNQGELLNVNRNTRVQNNATMWLRNAAEDSTAESSISTRRERDGGVVPVWSPPASNFSEQYADDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG* | 683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu8g1801 | 682 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 192 | 488 | IPR036134 | - | |
| Pvu8g1801 | 682 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 5 | 134 | IPR006050 | - | |
| Pvu8g1801 | 682 | Pfam | Blue/Ultraviolet sensing protein C terminal | 510 | 626 | IPR020978 | - | |
| Pvu8g1801 | 682 | ProSitePatterns | DNA photolyases class 1 signature 2. | 352 | 371 | IPR018394 | - | |
| Pvu8g1801 | 682 | Pfam | DNA photolyase | 7 | 163 | IPR006050 | - | |
| Pvu8g1801 | 682 | PRINTS | DNA photolyase signature | 143 | 159 | IPR002081 | - | |
| Pvu8g1801 | 682 | PRINTS | DNA photolyase signature | 332 | 348 | IPR002081 | - | |
| Pvu8g1801 | 682 | PRINTS | DNA photolyase signature | 352 | 370 | IPR002081 | - | |
| Pvu8g1801 | 682 | PRINTS | DNA photolyase signature | 391 | 405 | IPR002081 | - | |
| Pvu8g1801 | 682 | MobiDBLite | consensus disorder prediction | 565 | 599 | - | - | |
| Pvu8g1801 | 682 | MobiDBLite | consensus disorder prediction | 522 | 536 | - | - | |
| Pvu8g1801 | 682 | Pfam | FAD binding domain of DNA photolyase | 283 | 480 | IPR005101 | - | |
| Pvu8g1801 | 682 | MobiDBLite | consensus disorder prediction | 612 | 682 | - | - | |
| Pvu8g1801 | 682 | ProSitePatterns | DNA photolyases class 1 signature 1. | 332 | 344 | IPR018394 | - | |
| Pvu8g1801 | 682 | PANTHER | CRYPTOCHROME | 1 | 604 | IPR002081 | - | |
| Pvu8g1801 | 682 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 301 | 502 | - | - | |
| Pvu8g1801 | 682 | Gene3D | HUPs | 8 | 206 | IPR014729 | - | |
| Pvu8g1801 | 682 | MobiDBLite | consensus disorder prediction | 516 | 599 | - | - | |
| Pvu8g1801 | 682 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 7 | 178 | IPR036155 | - | |
| Pvu8g1801 | 682 | Gene3D | - | 134 | 293 | - | - | |
| Pvu8g1801 | 682 | PANTHER | CRYPTOCHROME-1 | 1 | 604 | - | - | |
| Pvu8g1801 | 682 | MobiDBLite | consensus disorder prediction | 640 | 682 | - | - | |
| Pvu8g1801 | 682 | TIGRFAM | crypt_chrom_pln: cryptochrome, plant family | 6 | 481 | IPR014134 | GO:0009785|GO:0009882 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu8g1801 | Pvu-Chr8 | 45687134 | 45692713 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu8g1801 | K12118 | - | gmx:100786551 | 1333.16 |
Event-related genes