Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1789 ATGGCAGCGAAGGCAAAGAAGAACAAGGTGGGGAGTCAATCGGGTTGTGGCCTCATGGGGAGAATTCTCCACCTCAAAAGCCATAAGCTTAGAAAATCATCCGTTCACTCCCTACCCTTGAAGAATCCACAGAGTGATGATGATGGCAAAAGTGAAGAACCAAAGACCCCAAATGAAGAATCAAAGGTTACAAAAAAAGGCTGCACTGAGCCACACAGACTGAGTGGTGCAGAACAGAACCCGGCCAGAAAGAGTACCTCTGTTCACCAACAACAACCTTGTACATATCGAAACAGTCAAAATCAAAGGCCTTCAGATGTTGTTGCAAGAAGCTCAACATCAACATCATCCCCTAGAGCTTCAATTTCAACTCACACTAAGGTTCAACAAAACAAGGACAAGAATCATAAGCGCAAGCCATATAGAGACCCCGCTGAAAATTCTCTTGCACTTGCTAGGATAAGTACTAGCAATGAGAACAATAACTCTAAATTGAAGCTCACTGGGAATTTGCTTGTGAATAATACCCCAAGGAGAAAGAGTGTGGAGTACATGCCTAAAAATGCAGAGTTGAACTCTGTGCCCATTTCCTACTCAATTACAAGCAAAGGCTCAATGGGGAATATCATGAGGAGCAACAGCACTGGCAATGAGGTTGGACAGTTTTTGAGTCCAAGGCAGAAAAAAGTGGACCCTGAGGTGTTGAAATCCATGGGAAATGAAGCATACAAGCAGGGGAGATTTGAAGAGGCTTTGGCTTTGTATGACCAAGCAATTGCTCTTGATTCAAATATGGCAACGTACCATTGCAACAAGAGTGCGGCTTTAATTGGTTTAGGAAGGTTTCAACAAGCAATTTTTGAGTGTGAGGAATCTATCAAACTGGACCCTTCGTATGTCAGAGCTCACAACCGTTTGGCCACAATATATTTCAGGTTGGGAGAAGCAAAAAAAGCACTGGATTGCAATCAATCAACCGGATGTGCTGATTCAATACTTGCTTTCCTAGCTCATGCTCTTCAAAATCATCTTAACAAATGCATAGAAGCACGGAAAGTAAATGCGTGGAGTGATGTACTAAAGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTTCTGAAGCTCCTAAGATATCAAGAGGCTTATGCCATCTATGAAAATATGCCAAAATTTCAACTTGATTGGTGTACCAAGGTATTTGGTCCGGCTTGCAGCGCTTACCTATTGATGATAGGAGCACTGGTTTACTTGGCAACTGGCAGGTTTGAGGAAGCTGTGACAGCAGCTCAGCAAGCAGCTAAAGTTGATCCAGGCAATAGAGAGGTGAATGCAGTGGTAAGGAGGGCGAGAGCAGCAACATCAGCTAGAATGAGTGGGAACTTGCTCTTCAAGGCCTCAAAATTCACCGAATCATGTGCCGTGTACAACGAAGGACTTGAACATGATCCTCACAACTCAGTTCTGTTATGCAACAGAGCTGCTTGTCGTTCTAAGCTTGGCCGATATGAGAAAGCAATTGAAGATTGTAACTCGGCACTTATGTTTCAGCCAGGTTATAGCAAAGCAAGATTAAGGAGGGCTGATTGCAATGCCAAGTTAGAACGGTGGGAAGCTGCTATTCAAGACTATGAAATGCTATTGAGAGAAAGGCCAGGGAACGAGGAAGTGGCAAGGGCTTTGTTTGAAGCTCAGCTCCAACTAAAGATTCTGCGAGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAACTTGGTTTTCATCTCGAGTAATGATCGGTTCAGACATTATGTAACCTCACCTGGGATGGCTGTGGTGCTCTTTAGCAACAAGGCAACCCACAAGAAAGTGTTACTTATGTTGGAGCAAACCAGCAAAAGATTCCCATCAGTTCATTTCCTCAAGGTGGAAATCGAAGACCACCCTTACTTAGCAAAGTCAGAAGGTGTTAGCTCCATCCCAGCCTTCAAAATATACAAAAACGGATCAAGAGTAAAAGAAATTTCAGGCAACAACCCCGAGTTGTTAGAAAGATCAGTTGAATTATACAGTAGCTGA 2094 0.4327 MAAKAKKNKVGSQSGCGLMGRILHLKSHKLRKSSVHSLPLKNPQSDDDGKSEEPKTPNEESKVTKKGCTEPHRLSGAEQNPARKSTSVHQQQPCTYRNSQNQRPSDVVARSSTSTSSPRASISTHTKVQQNKDKNHKRKPYRDPAENSLALARISTSNENNNSKLKLTGNLLVNNTPRRKSVEYMPKNAELNSVPISYSITSKGSMGNIMRSNSTGNEVGQFLSPRQKKVDPEVLKSMGNEAYKQGRFEEALALYDQAIALDSNMATYHCNKSAALIGLGRFQQAIFECEESIKLDPSYVRAHNRLATIYFRLGEAKKALDCNQSTGCADSILAFLAHALQNHLNKCIEARKVNAWSDVLKETQSAISLGADSAPQVYALQTEAFLKLLRYQEAYAIYENMPKFQLDWCTKVFGPACSAYLLMIGALVYLATGRFEEAVTAAQQAAKVDPGNREVNAVVRRARAATSARMSGNLLFKASKFTESCAVYNEGLEHDPHNSVLLCNRAACRSKLGRYEKAIEDCNSALMFQPGYSKARLRRADCNAKLERWEAAIQDYEMLLRERPGNEEVARALFEAQLQLKILRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKATHKKVLLMLEQTSKRFPSVHFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGNNPELLERSVELYSS* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1789 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 695 IPR044534 -
Pvu8g1789 697 Pfam Tetratricopeptide repeat 275 320 - -
Pvu8g1789 697 Pfam Tetratricopeptide repeat 426 498 - -
Pvu8g1789 697 Pfam TPR repeat 239 274 - -
Pvu8g1789 697 Pfam Thioredoxin 627 688 IPR013766 -
Pvu8g1789 697 SUPERFAMILY TPR-like 232 454 IPR011990 GO:0005515
Pvu8g1789 697 SUPERFAMILY Thioredoxin-like 547 689 IPR036249 -
Pvu8g1789 697 CDD TRX_family 606 686 - -
Pvu8g1789 697 Pfam Tetratricopeptide repeat 535 565 IPR019734 GO:0005515
Pvu8g1789 697 MobiDBLite consensus disorder prediction 43 72 - -
Pvu8g1789 697 Pfam Tetratricopeptide repeat 501 531 IPR001440 GO:0005515
Pvu8g1789 697 MobiDBLite consensus disorder prediction 28 146 - -
Pvu8g1789 697 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 695 - -
Pvu8g1789 697 SUPERFAMILY TPR-like 469 581 IPR011990 GO:0005515
Pvu8g1789 697 SMART tpr_5 232 265 IPR019734 GO:0005515
Pvu8g1789 697 SMART tpr_5 300 332 IPR019734 GO:0005515
Pvu8g1789 697 SMART tpr_5 499 532 IPR019734 GO:0005515
Pvu8g1789 697 SMART tpr_5 266 299 IPR019734 GO:0005515
Pvu8g1789 697 SMART tpr_5 533 566 IPR019734 GO:0005515
Pvu8g1789 697 SMART tpr_5 465 498 IPR019734 GO:0005515
Pvu8g1789 697 SMART tpr_5 419 452 IPR019734 GO:0005515
Pvu8g1789 697 Gene3D Tetratricopeptide repeat domain 230 584 IPR011990 GO:0005515
Pvu8g1789 697 Gene3D Glutaredoxin 592 696 - -
Pvu8g1789 697 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Pvu8g1789 697 Coils Coil 539 559 - -
Pvu8g1789 697 MobiDBLite consensus disorder prediction 79 128 - -
Pvu8g1789 697 ProSiteProfiles TPR repeat profile. 419 452 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1789 Pvu-Chr8 45232852 45236333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1789 280 568 Glycosyltransferase AT3G04240 23.473 1.78e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1789 K09527 - gmx:100782846 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1789 8 45232852 45236333 Pvu9g0310 9 6632086 6635884 PCT