Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1482 ATGATTTGTGTTGTTGAAACAAAATTCTTGGTTATTTCATGTATCTTATGCAGTGTTTTGTTAGGGTTTTCCAATGCAGTTGTAACCTCTAGATACAATGTGGTAAAATTTGGGGCAAAAGCAGATGGAAAAACTGACTCCACTGAACCATTCATGAAAGCTTGGGAATCAGCATGTGGTAATCTGAGCCCTGCAACAATTTACGTGCCTAAAGGGAGGTACTTGCTGAGAAACACTAATTTCCGAGGTCCATGCAAGAGGAAGGTGACATTCCTCATAGATGGGACTCTTGTGGCTCCTGAAGATTACACAGCACTAGGAAATTCTGGATTCTGGATTTTATTCAATCATGTGGAGAATCTAGTTGTTTCTGGTGGAAAATTAGATGGTAAAGGAGCTGCTTTCTGGAATTGTAGGAGATCTGGAAAGAGTTGTCCTGCAGGAGCAAGATCAATGACATTCAACTGGGTGAATAACTTGGTGGTTAGTGGCATAACTTCAGTGAACAGCCAAGTAAGTCACCTTGTAATCAACACCTGCAAGAATGTTGTTGTGAAAAATGTAAGGCTTATTGCACCTGAGCAGAGCCCTAACACCGACGGCATTCACGTTGAACGCTCAACTGGGGTTACCATTACTGGATCTACCTTACAAACTGGAGATGACTGCATATCCATTGGTGATGCCACCTACAACCTCTTCATCTCCAACATAAAATGTGGCCCTGGCCATGGCGTAAGTATTGGAAGTTTAGGTCAAAAAGTGGACGAAAAAGGAGTAGAAAATGTGACTTTAACGAACGCCATCTTCTCTGGATCGGACAATGGAGTGAGGATAAAGACATGGGCCAGACCGAGCAACGGGTTCGTTAGGAATGTTCTTTTCCAAAACATCGTAATGGACAAAGTTGAGAATCCCATCATCATTGATCAGAATTACTGCCCCAATAATCAAGGTTGTCCTTCCCAGACTTCAGGAATTAAGATCAGTGAAATCACATATTTGAACATAAATGGAAGTTCAGCAACACCAGAAGCAGTAACTTTTGATTGCAGCCCAAGTAATCCATGTCGAGGGATCAAATTTCAGGATATAAACCTAACCTACAAGAACATTGCTGCAACTTCATCGTGTAAGAACATTGAGGGGACGAGCAGTGGAACACTGGTGCCAGAAAGTTGTATATAA 1188 0.4184 MICVVETKFLVISCILCSVLLGFSNAVVTSRYNVVKFGAKADGKTDSTEPFMKAWESACGNLSPATIYVPKGRYLLRNTNFRGPCKRKVTFLIDGTLVAPEDYTALGNSGFWILFNHVENLVVSGGKLDGKGAAFWNCRRSGKSCPAGARSMTFNWVNNLVVSGITSVNSQVSHLVINTCKNVVVKNVRLIAPEQSPNTDGIHVERSTGVTITGSTLQTGDDCISIGDATYNLFISNIKCGPGHGVSIGSLGQKVDEKGVENVTLTNAIFSGSDNGVRIKTWARPSNGFVRNVLFQNIVMDKVENPIIIDQNYCPNNQGCPSQTSGIKISEITYLNINGSSATPEAVTFDCSPSNPCRGIKFQDINLTYKNIAATSSCKNIEGTSSGTLVPESCI* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1482 395 SUPERFAMILY Pectin lyase-like 24 395 IPR011050 -
Pvu8g1482 395 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 394 - -
Pvu8g1482 395 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Pvu8g1482 395 PANTHER - 13 394 - -
Pvu8g1482 395 SMART pbh1 260 281 IPR006626 -
Pvu8g1482 395 SMART pbh1 180 206 IPR006626 -
Pvu8g1482 395 SMART pbh1 290 311 IPR006626 -
Pvu8g1482 395 SMART pbh1 207 228 IPR006626 -
Pvu8g1482 395 SMART pbh1 229 250 IPR006626 -
Pvu8g1482 395 Gene3D - 21 393 IPR012334 -
Pvu8g1482 395 Pfam Glycosyl hydrolases family 28 59 384 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1482 Pvu-Chr8 26110528 26113052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1482 8 395 Glycoside Hydrolase AT2G43890 59.536 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1482 K01184 - gmx:100797183 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1482 8 26110528 26113052 Pvu8g1482 8 26110528 26113052 ECH
Pvu10g0406 10 5711128 5714114 Pvu8g1482 8 26110528 26113052 PCT