Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0406 ATGGCACAAATAGTTTTGCATGCTTTGCTACTATTCTTGTTCACATTTACACCAGCAACAGTGGCTGAGGGGGCAACTCCGAATGTTGTCAATTTTGGGGCCAAGCCAGATGGTGAAACTGACTCCACAAACGCATTCTTGAGTGCATGGGGTAGAGCATGCAGCTCAACAACACCAACCACCATTCATGTGCCACTAGGAAGGTTCTCAGTTGGTAAAGTAGTGTTTAAGGGGCCATGCAAGAACAAGGGCATCACAGTACGCATTGATGGTGCCCTGGTTGCACCTTCAAACTATGATGTCATTGGAAATGGTGGAAATTGGTTGCATTTTGATGAGGTTGATGGAGTTGCAGTGTTTGGTGGTGTTCTTGATGGGCAAGGAATAGGTCTGTGGGAATGTAAGAGATCTGGCAAGATTTGTCCAACTGGTGCTACGAACTTGGGATTTAGCAATTGGAAGAACATTGTGATGAATGGAGTGAGGTGTGTGAAGAGCCAAATGTTCCAGATAGTTATTGATCGATGTGAGAATGTGAGAGTAGAGGGTGTTAAGGTATCAGCTGCAGGAAACAGCCCTAACACTGATGGCATTCACGTTCAACTCTCATCCAGAGTCACCATTCTCAACTCCACCATAGCAACAGGTGATGATTGCATCTCAATTGGTCCTGGAACTACTAATTTATGGATACAAAACATAGCTTGCGGACCTGGTCATGGAATAAGTGTGGGGAATGAATTAGAAGAGGCTGGTGTGGAGAATGTGACAGTGAAAGCAGTAACATTTGCTGGAACTGAGAATGGTGTGAGAATAAAGTCATGGGGGAGACCTAGCAATGGGTTTGCAAGGAACATCCTTTTCCAACATGTTACCATGCTTAATGTCCAAAATCCCATTGTGATCGACCAAAACTATTGTCCCCATCAAAACAATTGTCCTGGTCAGGTATCTGGGGTTGAAATCACCAATGTAACACCCTAG 984 0.4451 MAQIVLHALLLFLFTFTPATVAEGATPNVVNFGAKPDGETDSTNAFLSAWGRACSSTTPTTIHVPLGRFSVGKVVFKGPCKNKGITVRIDGALVAPSNYDVIGNGGNWLHFDEVDGVAVFGGVLDGQGIGLWECKRSGKICPTGATNLGFSNWKNIVMNGVRCVKSQMFQIVIDRCENVRVEGVKVSAAGNSPNTDGIHVQLSSRVTILNSTIATGDDCISIGPGTTNLWIQNIACGPGHGISVGNELEEAGVENVTVKAVTFAGTENGVRIKSWGRPSNGFARNILFQHVTMLNVQNPIVIDQNYCPHQNNCPGQVSGVEITNVTP* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0406 327 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 2 325 - -
Pvu10g0406 327 Gene3D - 15 327 IPR012334 -
Pvu10g0406 327 PANTHER - 2 325 - -
Pvu10g0406 327 SMART pbh1 176 202 IPR006626 -
Pvu10g0406 327 SMART pbh1 283 304 IPR006626 -
Pvu10g0406 327 SMART pbh1 253 274 IPR006626 -
Pvu10g0406 327 SMART pbh1 203 224 IPR006626 -
Pvu10g0406 327 SMART pbh1 226 246 IPR006626 -
Pvu10g0406 327 Pfam Glycosyl hydrolases family 28 54 326 IPR000743 GO:0004650|GO:0005975
Pvu10g0406 327 SUPERFAMILY Pectin lyase-like 12 326 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0406 Pvu-Chr10 5711128 5714114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0406 26 325 Glycoside Hydrolase AT3G59850 62.171 2.01e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0406 K01184 - gmx:100784002 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0406 10 5711128 5714114 Pvu10g0406 10 5711128 5714114 ECH
Pvu10g0406 10 5711128 5714114 Pvu8g1482 8 26110528 26113052 PCT