Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1202 ATGGGGGAACCAAAGTTGAGCAGCATGAAGGACAAGAGATGGTCACTTCATGGCATGACAGCTCTTGTGACAGGAGGCACCAGAGGGATTGGGCATGCCATCGTGGAGGAATTGGCAGAATTTGGAGCAAGCATTCATGTATGTTCACGAAAGGAAGAAGATATTAATAGGTGTTTAGAAGAGTGGAAAAAGAAGGGCTTCAACGTCACTGGTTCAGTCTGTGATGTCTTACATCGCCACCAACGCCAAACTCTCATGGAAACTGTTTCATCCATCTTTCAGGGCAAGCTTAACATTCTAGTGAACAATGCAGGGAGAGAGATAACAAAGAAAATAATAGATCACACTGCTGAAGATATATCAACTATAATGGCTACCAATTTTGAGTCTGCTTTTCATTTGACTCAACTTGCACATCCACTTCTTAAAGAATCTAGATCTGGGAACATTGTATTTATTTCATCCATTGCAGGTCTAAAAGCTGTTCCAGCTTTATCTGCTTATGCAGCCACTAAAGGAGCCATGAATCAATTCACCAAGAACGTGGCATTGGAGTGGGCAAAGGATAACATTCGTGCAAATGCTGTAGCACCTGGACCAGTTTGGACTCCACTCTTAGATTCTATCAGG 630 0.427 MGEPKLSSMKDKRWSLHGMTALVTGGTRGIGHAIVEELAEFGASIHVCSRKEEDINRCLEEWKKKGFNVTGSVCDVLHRHQRQTLMETVSSIFQGKLNILVNNAGREITKKIIDHTAEDISTIMATNFESAFHLTQLAHPLLKESRSGNIVFISSIAGLKAVPALSAYAATKGAMNQFTKNVALEWAKDNIRANAVAPGPVWTPLLDSIR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1202 210 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 205 - -
Pvu8g1202 210 PANTHER TROPINONE REDUCTASE 1 209 IPR045000 GO:0016491
Pvu8g1202 210 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Pvu8g1202 210 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Pvu8g1202 210 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Pvu8g1202 210 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Pvu8g1202 210 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Pvu8g1202 210 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 209 IPR036291 -
Pvu8g1202 210 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Pvu8g1202 210 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Pvu8g1202 210 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Pvu8g1202 210 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Pvu8g1202 210 Gene3D - 4 210 - -
Pvu8g1202 210 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 1 209 - -
Pvu8g1202 210 Pfam short chain dehydrogenase 20 209 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1202 Pvu-Chr8 14388403 14390640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1202 11 209 Miscellaneous Gene Families AT2G29290 60.302 2.19e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1202 K08081 - gmx:100817405 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1202 8 14388403 14390640 Pvu8g1202 8 14388403 14390640 ECH
Pvu8g1202 8 14388403 14390640 Pvu1g2427 1 49560384 49561374 ECH