Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1088 ATGAACCCCACTTTCACTCTCATAACACAACAATTTCACAACAACATCTATTTACTACAAAGGAATACACCTTGTTTCTTTGCGTGTGACTTCACTCCACCAACATCAACTGCCATGGCTCTCAACATCTCTTGCTCCAAGGCCATTCTAGGAACTCATGTTCCTATGTCTGTTCCTAAGTCTGCTCACAACACACCCAATTTTTTCTTCACTGCCATCGACAGAAAGGGTTGCAACTTTGCCTTCCCAAAACTTGTTCAAAACCAGGGTCTTTTCCCACTTCACTCTGTGCCATCCGAAACTATGGTGGATTTGGACAATTTGGTGCTTCAAACTGAAGAAAAACCAAAGGAACCAAAGATCATTAATGTCAAATTTCAGTTGCATCAGAAATGTCGTTTTGAGGAACAATTTATGGTAGTTGGTAATGATCCAATGTTTGGCTCATGGAACCCTGCAAAAGCCATACCAATGAGCTGGTCAGAAGGGCATGTGTGGACAGCAGAGATGGCTGTACCTGCTGGAAAATTCCAGTACAAAATCATCTTGAAAACAAGAAATGGTGACATTATGTGGCAGCCAGGGCCAGACAGATTTGTTCAGACTTGGGAAGCTATGAACAGAATCACTATTTCTGAGGATTGGGAAAATGCTAGACTTCAGAAAGTAACAGATGATAATGAAGTTGTTTCCACCAAGACATCAGAGGAAGATAAAGCTGATCAGGCAGATAAGGATTCCCAGAAAAAGTCTGAAATTTCCAATGTGGCTGAGAATTTGGATACTGCAAAAGAGAACCAGAAATCCGATGCTTCAAGGTCATGA 825 0.4145 MNPTFTLITQQFHNNIYLLQRNTPCFFACDFTPPTSTAMALNISCSKAILGTHVPMSVPKSAHNTPNFFFTAIDRKGCNFAFPKLVQNQGLFPLHSVPSETMVDLDNLVLQTEEKPKEPKIINVKFQLHQKCRFEEQFMVVGNDPMFGSWNPAKAIPMSWSEGHVWTAEMAVPAGKFQYKIILKTRNGDIMWQPGPDRFVQTWEAMNRITISEDWENARLQKVTDDNEVVSTKTSEEDKADQADKDSQKKSEISNVAENLDTAKENQKSDASRS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1088 274 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 116 217 IPR002044 GO:2001070
Pvu8g1088 274 SUPERFAMILY Starch-binding domain-like 119 209 IPR013784 GO:0030246
Pvu8g1088 274 Gene3D Immunoglobulins 120 216 IPR013783 -
Pvu8g1088 274 PANTHER ALPHA-AMYLASE 70 246 - -
Pvu8g1088 274 CDD CBM20 124 215 - -
Pvu8g1088 274 MobiDBLite consensus disorder prediction 226 274 - -
Pvu8g1088 274 MobiDBLite consensus disorder prediction 229 252 - -
Pvu8g1088 274 SMART CBM_20_2 121 212 IPR002044 GO:2001070
Pvu8g1088 274 Pfam Starch binding domain 122 207 IPR002044 GO:2001070
Pvu8g1088 274 PANTHER OS01G0856900 PROTEIN 70 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1088 Pvu-Chr8 12064455 12065799 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1088 - - vun:114184232 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1088 8 12064455 12065799 Pvu8g1088 8 12064455 12065799 ECH
Pvu8g1088 8 12064455 12065799 Pvu10g0031 10 616979 620331 PCT