Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0031 ATGATGAAGTCTCTCACCAGTTCTTGTTCTGAGTCCATCCTCCACTCTCTAGGATCTTTCTCTCCCAGAGTTGCCATTCGGGTTTCTGATAGACCCGAATTCTTCTTCTCTCCGCGTTCGAGGAACGGCAACAAGGGTTGCAACGCATGCCTCCTCAAACTTGTTCCGGTCAAGGCTATTTTTCCAGTTCATGCAGTGCCATCGAAAGACCAGGTGGACTCGGAAAATGCAGAACCTGAAGCTGAAAAAACTGAACAAACAAATGAATCGAAGTTTGTTCATGTAACATTTAAGTTTCAAAAGAATTGTGACTTCGGAGAACAGTTTCTTTTAGTTGGAGGTGATCCTATGTTTGGTTCATGGAATCCTTTAGAAGCATTACCGATGACATGGTCTGAAGGAGATGTATGGAGTGTTGAGATGGATATACCTGTTGGAAACTCAATCCAGTACAAGTTCATATTGAAAGGAAAAGAAGGTGATAATTTTTGGCAGCCAGGACCAGATAGATTCATCCACATTTGTGAAACTATGGAGAGAATAACTGTTTCTGAAGATTGGGAGAATGCAGATCTTCAGAAAATATCAGAGGATGCTCCCCTTGCTGAACCAGATAAGGAACCCCAAATTGACTCAGAAGTGGATTCCAATGCATCTGAAATAAAGGCTGTTAAAGCTACCCAAAGTCAAGAGACACCATTTGCTGAACCAGTCACTAATAATAGTAGTTCTTCCTGGAATGGTCCTTTGGTTATTGTTGCAGAGAATATAATTTCCTCCGAGGATGTCATAAGGCATATAAGAAGAAAATGGAATGAAAAGAAGATTCGTCAAGGGAGTGAAGAATCAGCTAACAGTACAGTACATGATCTTGGAAACAATGGAAGTGCTGAATCACTCAAGAATCAGGAAAGCAGCTTACTTGATTTTCAAAATGGTCTTGTTCTTGTACCTGGCTTAATGCAACCACCAACTGAGCCAACTAACGAGGCAAGCCAAGGTGAAGTTGAAGAAAAGACTAGCATGGACATTTCAGTTGAAGCTTCTGAAAGTGATGAGGATCAGAATCCTCCCGAGTTGAGTATGGAGCAAGAAACTGATGTGCCAGAGCTAGATGAACACGATTTGTCCCCAGATACAGATACAGATAGAGAAGAGAGGCCAAAGTATGAAGCCGATGATGGCACTCCCTTGCAAAATCACATAAAATGGGGCAAAGAAAGGGTAAAGAAGTTTCTAGCAGAACTAGGATTCCTTGGAGGGTCAAAGATGGATGGGGACTCATGA 1287 0.4196 MMKSLTSSCSESILHSLGSFSPRVAIRVSDRPEFFFSPRSRNGNKGCNACLLKLVPVKAIFPVHAVPSKDQVDSENAEPEAEKTEQTNESKFVHVTFKFQKNCDFGEQFLLVGGDPMFGSWNPLEALPMTWSEGDVWSVEMDIPVGNSIQYKFILKGKEGDNFWQPGPDRFIHICETMERITVSEDWENADLQKISEDAPLAEPDKEPQIDSEVDSNASEIKAVKATQSQETPFAEPVTNNSSSSWNGPLVIVAENIISSEDVIRHIRRKWNEKKIRQGSEESANSTVHDLGNNGSAESLKNQESSLLDFQNGLVLVPGLMQPPTEPTNEASQGEVEEKTSMDISVEASESDEDQNPPELSMEQETDVPELDEHDLSPDTDTDREERPKYEADDGTPLQNHIKWGKERVKKFLAELGFLGGSKMDGDS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0031 428 Gene3D Immunoglobulins 83 189 IPR013783 -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 197 213 - -
Pvu10g0031 428 Pfam Starch binding domain 93 178 IPR002044 GO:2001070
Pvu10g0031 428 Coils Coil 424 428 - -
Pvu10g0031 428 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 87 189 IPR002044 GO:2001070
Pvu10g0031 428 PANTHER ALPHA-AMYLASE 2 418 - -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 318 402 - -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 332 346 - -
Pvu10g0031 428 SMART CBM_20_2 92 181 IPR002044 GO:2001070
Pvu10g0031 428 CDD CBM20 95 187 - -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 276 300 - -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 371 402 - -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 281 300 - -
Pvu10g0031 428 PANTHER OS01G0856900 PROTEIN 2 418 - -
Pvu10g0031 428 MobiDBLite consensus disorder prediction 197 216 - -
Pvu10g0031 428 SUPERFAMILY Starch-binding domain-like 90 182 IPR013784 GO:0030246
Pvu10g0031 428 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0031 Pvu-Chr10 616979 620331 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0031 - - vra:106774358 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1088 8 12064455 12065799 Pvu10g0031 10 616979 620331 PCT