Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0974 ATGAGAATTTTCCATGTTCCTTTCCTTTTCATCATATTATGTTACTGCTTTTGGATACATCACACTGTTTATTTCACCGGTGTTTCTGGTCAAATTGTTGAGGGTCAACAACAATCATTGCTAAAACTGAAGAACAGCCTCAAATTCGAGCAAGAAAAATCTCACAAACTTGTGTTCTGGAATTCAAGCATAGATTGCTGTAAGTGGACAGGTGTAACCTGTGATAAGGAGGGACAGGTTATTGGCCTTGATCTGAATGGAGAATCAATCAATGGTGGATTTGACAACTCAAGTACTCTTTTCAACCTGCAAAGTCTCCGGATATTGAATTTGTCTGTTAATAATTTCAGTTCTGAGATACCATCCGGATTCAGCAAGTTGAAGAACTTAACATATCTGAATTTGTCTCATGCTGGTTTTGTGGGGCAGATTCCAATAGAGATTTCTTCCCTGACAAGGTTGGTAACTCTTGATATCTCTTCTCTTTCCTTTTTATTTGGGAAACCGCTGAAACTTGAAAAAATAGATTTGCAAATGCTTGTCAAAAACCTCACCATGATTAGACAATTGTATATGGATGGTGTGAGTGTATCAGCCAAGGGAAATGAATGGATCAATGCTTTGTTGCAGCTACATAGCCTGCAGGAGCTGAGCATGTCAAACTGCAATCTCTCAGGACCCCTTGATCCTTCCCTAACAAGACTTCAAAACCTATCAATCATTCGTCTTGATCAAAACAATTTTTCATCCTCGGTGCCAAAAAACTTTGCTGATTTTCCAAATTTAGTAATCCTCCACCTTAGTTCTTGTGGATTGACAGGAATATTTCCAGAGAAGATCTTTCAGGTGACAACATTGTCTGACATAGACTTATCATATAACGATTATCTTAATGGATCTTTGCCTGGATTACCTCTGAATGGTTCCCTTCAGAAATTAATTGTGAGTCACACAAGGTTCTCAGGAGCATTACCAACTTCTATTGGTAATCTTAAGCAGTTATCCATCTTAGATCTTTCTAATTGCCATTTTAACGGAACACTACCCAGTTCAATGTCAGGACTCAAGGAACTCACTTCTCTGCTATTGTCGTTTAATAACTTTACTGGTCCAATTCCGTCCTTGAATATGTTCAGGAACCTCACGCATTTAGACTTCTCACACAATAACTTCACAGGTTCCATCACTTATGCTCACTTGGAAGGCCTAAGAAAGCTGGTCCAAATTGATTTACAGGACAATTTACTTGATGGAAACATTCCTTCTTCTCTTTTTGCACTTCCATCGGTGCAAAGGATTTATCTTTCCAACAACCATTTTTGTGGACAGCTTGATGAATTTTCAAATATCTCCTCCTCCATGTTAGAGAGTCTTGATTTAAGAAGTAATAATTTAGAAGGCCCCATTCCTGCATCTATTTTTAATCTCACGTCTCTTATTGTCCTCCAATTGTCATTCAACAAGTTAAAAGGCACAATAAAGCTAGATGTGATTCAGAGACTTCCAAAACTAAGTAAACTAGCTCTTTCACACAACAACTT 1541 0.379 MRIFHVPFLFIILCYCFWIHHTVYFTGVSGQIVEGQQQSLLKLKNSLKFEQEKSHKLVFWNSSIDCCKWTGVTCDKEGQVIGLDLNGESINGGFDNSSTLFNLQSLRILNLSVNNFSSEIPSGFSKLKNLTYLNLSHAGFVGQIPIEISSLTRLVTLDISSLSFLFGKPLKLEKIDLQMLVKNLTMIRQLYMDGVSVSAKGNEWINALLQLHSLQELSMSNCNLSGPLDPSLTRLQNLSIIRLDQNNFSSSVPKNFADFPNLVILHLSSCGLTGIFPEKIFQVTTLSDIDLSYNDYLNGSLPGLPLNGSLQKLIVSHTRFSGALPTSIGNLKQLSILDLSNCHFNGTLPSSMSGLKELTSLLLSFNNFTGPIPSLNMFRNLTHLDFSHNNFTGSITYAHLEGLRKLVQIDLQDNLLDGNIPSSLFALPSVQRIYLSNNHFCGQLDEFSNISSSMLESLDLRSNNLEGPIPASIFNLTSLIVLQLSFNKLKGTIKLDVIQRLPKLSKLALSHNN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0974 513 Pfam Leucine Rich Repeat 105 127 IPR001611 GO:0005515
Pvu8g0974 513 SMART LRR_typ_2 403 427 IPR003591 -
Pvu8g0974 513 SMART LRR_typ_2 331 355 IPR003591 -
Pvu8g0974 513 SMART LRR_typ_2 259 283 IPR003591 -
Pvu8g0974 513 SMART LRR_typ_2 476 500 IPR003591 -
Pvu8g0974 513 SMART LRR_typ_2 235 258 IPR003591 -
Pvu8g0974 513 SMART LRR_typ_2 103 126 IPR003591 -
Pvu8g0974 513 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 8 513 - -
Pvu8g0974 513 SUPERFAMILY RNI-like 229 513 - -
Pvu8g0974 513 Gene3D Ribonuclease Inhibitor 33 201 IPR032675 -
Pvu8g0974 513 Gene3D Ribonuclease Inhibitor 202 305 IPR032675 -
Pvu8g0974 513 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Pvu8g0974 513 Pfam Leucine rich repeat 455 513 IPR001611 GO:0005515
Pvu8g0974 513 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515
Pvu8g0974 513 Pfam Leucine rich repeat 379 440 IPR001611 GO:0005515
Pvu8g0974 513 Gene3D Ribonuclease Inhibitor 378 513 IPR032675 -
Pvu8g0974 513 Gene3D Ribonuclease Inhibitor 306 377 IPR032675 -
Pvu8g0974 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING, PLANT-TYPE, LEUCINE-RICH REPEAT DOMAIN, L-RELATED 8 513 - -
Pvu8g0974 513 SUPERFAMILY L domain-like 41 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0974 Pvu-Chr8 9851450 9852990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0974 265 513 Receptor kinase-like Gene Family AT3G23110 36.145 1.09e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0974 - - pvu:PHAVU_008G0953000 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0974 8 9851450 9852990 Pvu10g0141 10 2159672 2163466 PCT
Pvu10g0718 10 17454685 17456340 Pvu8g0974 8 9851450 9852990 PCT