Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0886 ATGGCCAGCGTGAAGGTTGCATGCGTGGTTGTAATGTTCATGGCTGTGGTGAGTGCACCTATGATGGTGCAGGCCGTTACATGCAACGATGTGATAATGCAACTCACACCGTGCCTACCTTACTTGATGAATGGTGGAGGGGCTTCAGCAGGGTGTTGTAGCGGAGTGAGGAACCTTCTGGGTGCTGCGGGAACCACCGCTGACAAACAAACTGTCTGCAACTGTCTCAAAAATGCTGCTGGCAGGTTTAACATCAATGACCAGTATGCTCAGGCACTCCCTGGCGTCTGCCATGTCAATGTCCCTTACAAGATCAGCCGCTCGACCAACTGTGCAAACATCAGGTTCTGA 351 0.5185 MASVKVACVVVMFMAVVSAPMMVQAVTCNDVIMQLTPCLPYLMNGGGASAGCCSGVRNLLGAAGTTADKQTVCNCLKNAAGRFNINDQYAQALPGVCHVNVPYKISRSTNCANIRF* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0886 116 CDD nsLTP1 26 111 - -
Pvu8g0886 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Pvu8g0886 116 Pfam Protease inhibitor/seed storage/LTP family 28 111 IPR016140 -
Pvu8g0886 116 PANTHER - 1 113 IPR000528 GO:0006869|GO:0008289
Pvu8g0886 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 113 IPR036312 -
Pvu8g0886 116 SMART aai_6 28 111 IPR016140 -
Pvu8g0886 116 Gene3D - 25 116 IPR036312 -
Pvu8g0886 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 113 - -
Pvu8g0886 116 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Pvu8g0886 116 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Pvu8g0886 116 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Pvu8g0886 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Pvu8g0886 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0886 Pvu-Chr8 8658472 8659588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0886 25 115 Acyl Lipid Metabolism Gene Families AT5G59310 49.451 1.73e-24 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0886 - - pvu:PHAVU_008G087100g 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0886 8 8658472 8659588 Pvu10g0692 10 15124292 15126129 PCT