Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2605 GATGATTGCATATCAATAGAAAGTGGATCCAGGAATGTGCAAGCCACAAAAATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGTCTGGGGAATCCAAGGATTTTGTTTCAGGAGTAACAGTAAATGGAGCTAAATTTTCTGGAACTACCAATGGAGTAAGAATTAAAACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAGTTTCAGAACATTCAAATGGAGAAAGTAACGAACCCCATAGTAATAGATCAAAATTACTGTGATCAAGCGACACCATGCAAAAAACAAAAATCTGCAGTTCAGATTAAGAACGTGCTGTACGAAAACATAAAGGGCACAAGTGGTTCTGATGTGGGTGTGCAATTTGATTGCAGCGAGAAGTTTCCATGCGAAGGGATAGTGTTGCAGAACATAGATCTGCAATATGAAGATAGAAGAGAGGCCAAGGCTTCATGCAACAGTGTTCAATTGTCCTACAGAGGAGATGTTAACCCTCAGTGCCCATAG 525 0.4229 DDCISIESGSRNVQATKITCGPGHGISIGSLGSGESKDFVSGVTVNGAKFSGTTNGVRIKTWQGGSGSASNIKFQNIQMEKVTNPIVIDQNYCDQATPCKKQKSAVQIKNVLYENIKGTSGSDVGVQFDCSEKFPCEGIVLQNIDLQYEDRREAKASCNSVQLSYRGDVNPQCP* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2605 174 PANTHER ENDO POLYGALACTURONASE 1 173 - -
Pvu7g2605 174 PANTHER - 1 173 - -
Pvu7g2605 174 Gene3D - 1 171 IPR012334 -
Pvu7g2605 174 ProSitePatterns Polygalacturonase active site. 17 30 IPR000743 GO:0004650|GO:0005975
Pvu7g2605 174 Pfam Glycosyl hydrolases family 28 1 162 IPR000743 GO:0004650|GO:0005975
Pvu7g2605 174 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 18 28 IPR000408 -
Pvu7g2605 174 SUPERFAMILY Pectin lyase-like 1 173 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2605 Pvu-Chr7 49153504 49154436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2605 1 173 Glycoside Hydrolase AT2G41850 61.850 2.79e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2605 K01184 - pvu:PHAVU_007G2531001 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2605 7 49153504 49154436 Pvu7g2605 7 49153504 49154436 ECH
Pvu7g2605 7 49153504 49154436 Pvu1g1406 1 37991903 37994564 PCT