Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1406 ATGGCCCTCCTTAAACACCTCCTCCTCTCTCTCCCCATTTTCATCATTTCTTTTGTTTTTTGTCATGCCACCTTGCAAGAGGACCCACTTACCAGTATATATGTTCATCATTCACCTTCCACTGATAATGGTGGGACATTATTCAAGAACTTCAACAAGCAAAGCATAAATCTTTTGAGCTTAAACAGGTTGGAGAAGCGTAGCTCCCTTAGAAAGGTTAATGTCAATGATTATGGAGCTGAGGGGAGTGGTGATACTGATGACTCAGAGGCTTTCAAGAAGGCTTGGGATGTGGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTGAGGAGAATTATCTTCTCAAACCAATCAGATTCTCTGGCCCTTGCAAACCTAACATTGAAGTGCAGATTTCTGGAACCCTTGAAGCATCAGATGATCCATCAGATTACAAGGAAGACAGCAGTCACTGGCTTGTGTTTGAGAATATTAAGAAACTGTTTGTTTATGGTGGTGGAACCATCGATGGAAACGGCAAGATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGACCATGCAAGGATGCTCCAACGGCTCTGACTTTCGATAATTGTGAGGACTTGATAGTTGAGAACCTGAACATAGAAAATGCTCAACAAATGCACGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTGGCCTTAACGTGATTGCACCAGAGGATAGCCCAAACACCGATGGGATTCATGTCACAAATACGCAAAACATCCAAATCTCAGATTCTGTCATAGGAACTGGTGATGATTGCATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACAAATATTACATGTGGACCTGGTCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAAATTGTTTCAGGAATATTAGTGAATGGAGCCAAGATTTTTGGAACCAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCCAATTTCAGAACATTGAGATGGAGAATGTGACCAATCCCATAATAATAAATCAGAATTACTGTGACAAGAAGAAAAAACCATGCAAAAAACGGAAATCCGCTATTCAAATCAAGAATGTGTTGTACCAGAACATAACTGGTACAAGTTCTTCTGATATAGCTGTGAAGTTTGACTGCAGTGAGAAGTTTCCGTGCCAAGAGATAAAATTGCAGAACATAGACCTTAAGTGCGAAGACGGAGATGATGCTGAGGCTTGGTGTAACAATGTTGAATTATCTTACTTAGGACACGTTAAGCCTCGTTGCAATTCAGAAAACATTTTTACCACCTTTTGGAAATACTTTTCATGGTATATATGA 1371 0.4041 MALLKHLLLSLPIFIISFVFCHATLQEDPLTSIYVHHSPSTDNGGTLFKNFNKQSINLLSLNRLEKRSSLRKVNVNDYGAEGSGDTDDSEAFKKAWDVVCSSGEAILVVPEENYLLKPIRFSGPCKPNIEVQISGTLEASDDPSDYKEDSSHWLVFENIKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTALTFDNCEDLIVENLNIENAQQMHVSFQDSENVKVSGLNVIAPEDSPNTDGIHVTNTQNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKEIVSGILVNGAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMENVTNPIIINQNYCDKKKKPCKKRKSAIQIKNVLYQNITGTSSSDIAVKFDCSEKFPCQEIKLQNIDLKCEDGDDAEAWCNNVELSYLGHVKPRCNSENIFTTFWKYFSWYI* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1406 456 SUPERFAMILY Pectin lyase-like 71 447 IPR011050 -
Pvu1g1406 456 Gene3D - 59 449 IPR012334 -
Pvu1g1406 456 PANTHER - 7 444 - -
Pvu1g1406 456 Pfam Glycosyl hydrolases family 28 106 428 IPR000743 GO:0004650|GO:0005975
Pvu1g1406 456 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Pvu1g1406 456 SMART pbh1 305 326 IPR006626 -
Pvu1g1406 456 SMART pbh1 252 273 IPR006626 -
Pvu1g1406 456 SMART pbh1 334 355 IPR006626 -
Pvu1g1406 456 SMART pbh1 225 251 IPR006626 -
Pvu1g1406 456 PANTHER ENDO POLYGALACTURONASE 7 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1406 Pvu-Chr1 37991903 37994564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1406 7 439 Glycoside Hydrolase AT3G07970 52.403 6.08e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1406 K01184 - gmx:100797601 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1406 1 37991903 37994564 Pvu1g1406 1 37991903 37994564 ECH
Pvu7g2605 7 49153504 49154436 Pvu1g1406 1 37991903 37994564 PCT