Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2237 ATGAAGAGGCTAGTAACTGTGCTTTTACTCATAGTATTAAGCACTGCTTTGGGAGGTAAAGATGATCATGGACCGTGTAAGCAAGAAGTGTTGAATCCTAGGCCTCACAGTGTGTCAATCTTAGAGTTTGGGGCTGTTGGAGATGGAAAAACATTGAACACAGTTGCGTTCCAAAATGCAGTTTTTTATGTCAAGTCATTTGCCGACAAAGGTGGTGCTCAACTATATGTTCCATCGGGCAGATGGCTTACCGGAAGTTTCAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGAGCAACCATCATTGCATCGCAGGATTATGCACACTGGCCTGCTGTGGATCCCCTACCATCCTATGGTCGGGGAATTGATGTTCCAGGTGGGAGATATTGCAGTTTGATTTATGGACGCAACTTAAGTGATGTGGTGATTACAGGTGACAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGAACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCGTAATCTCAAATTTGACCTTTTTAAACTCTCCTGCTTGGAGCATTCATCCAGTGTATTGCAGCAATGTTCGAATCCAAAACATAACAGCTCATGCTCCAACCGAGTTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCCGACCATGTTTGCATTGACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGAAAATCAACCTCGAACGTCCACATCAGGGGTGTTCATCTACAATCATCATCTGGTGCTGGCCTAGCATTTGGAAGCGAGATGTCTGGAGGCATATCTGGTATAATTGCAGAGGATCTCCATATTATAAACTCGACAATTGGCATTGAACTGAAGACAACTAGGGGTCGAGGTGGCTATATGAGAAACATCTTAATTTCTGACACAAAATTGGAAAATATTTACTTGGGAATCGGCATGACAGGATTCTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCTGTTGTTGGTAACATTACTTTTGAGAATGTGATTGGTGCAAATGTTGCTATTGCTGGGAATTTTTCTGGAATAGTTGATTCACCCTTCACTCCTATCTTCCTTTCAAACGTGACTTTTTCTACTGGTTCTGAGTCATCTTCTTCGTGGTTTTGTTCTAATGTAATGGGAGTCTCTCAGGATGTGTTTCCTGAGCCATGTCCTAACCTGCTGAACACGCAGTCAAACTTTTCGTCCAGCTTTTCTTCTCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGA 1362 0.4266 MKRLVTVLLLIVLSTALGGKDDHGPCKQEVLNPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYVKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLERGATIIASQDYAHWPAVDPLPSYGRGIDVPGGRYCSLIYGRNLSDVVITGDNGIIDGQGSVWWDLIRTHSLNYSRPHIIELVGSDNIVISNLTFLNSPAWSIHPVYCSNVRIQNITAHAPTEFPYTSGIVPDSSDHVCIDNSNISTGHDAIVLKSGWDQYGVAYGKSTSNVHIRGVHLQSSSGAGLAFGSEMSGGISGIIAEDLHIINSTIGIELKTTRGRGGYMRNILISDTKLENIYLGIGMTGFSGSHPDDKYDPNAVPVVGNITFENVIGANVAIAGNFSGIVDSPFTPIFLSNVTFSTGSESSSSWFCSNVMGVSQDVFPEPCPNLLNTQSNFSSSFSSLHPSSSYVSSA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2237 453 PANTHER POLYGALACTURONASE-RELATED 5 444 - -
Pvu7g2237 453 SUPERFAMILY Pectin lyase-like 29 434 IPR011050 -
Pvu7g2237 453 SMART pbh1 294 315 IPR006626 -
Pvu7g2237 453 SMART pbh1 205 231 IPR006626 -
Pvu7g2237 453 SMART pbh1 323 344 IPR006626 -
Pvu7g2237 453 SMART pbh1 232 253 IPR006626 -
Pvu7g2237 453 SMART pbh1 266 288 IPR006626 -
Pvu7g2237 453 SMART pbh1 182 202 IPR006626 -
Pvu7g2237 453 Pfam Glycosyl hydrolases family 28 135 415 IPR000743 GO:0004650|GO:0005975
Pvu7g2237 453 Gene3D - 26 420 IPR012334 -
Pvu7g2237 453 PANTHER PECTIN LYASE-RELATED 5 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2237 Pvu-Chr7 45647847 45651717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2237 1 435 Glycoside Hydrolase AT3G16850 59.497 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2237 - - gmx:100801823 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2237 7 45647847 45651717 Pvu7g2237 7 45647847 45651717 ECH
Pvu1g2177 1 47399941 47403831 Pvu7g2237 7 45647847 45651717 PCT