Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2177 ATGCAACTGTTCTTGCACTGGTTTCAGAACTTTGTTGATTCATTGCAGTTTCAACTTGTTGCTGCTCAAGCACACATGAAGGGGCTAGTGGCAGTGCTTTTAGTTGTGGCAATATGCACTGCTGTGGAAAGCAACGGAGAAGAGAATGGTGGAACATGTAAACGGAATGCGTTGAATGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCTGTTGGAGATGGAATGACACTGAACACAGTTGCGTTCCAAAACGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGGGGTGCCCAACTATATGTTCCATCTGGCACATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGTGCTACGATCCTTGCATCTCAGGATTATTCTCATTGGGATGTACTGGATTCCCTCCCTTCTTATGGTAGAGGAATTGGGAGATATCGCAGCTTAATCTACGGGCAAAGTTTAAGCGATGTGGTAGTTACAGGTGATAATGGAACTATAAACGGGCAAGGTTCTATCTGGTGGACGCTGTTCAGTTCTCATTCCTTAAACTACAGTCGACCAAATCTTGTAGAATTTGTTGATTCCGTTGATGTCATAATTTCCAATTTGACTTTTGTAGACGCTCCAGCTTGGGGCATCCATCCAGTATATTGCAGTAACGTTCAAATTCAAAACATTACTTCTCGTGCACCACCCGAATCCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTAAGTATGTATGCATCGAGAACAGTAACATTAGCACGGGTCATGATGCAATTGTGTTGAAGAGTGGTTGGGATGAGTACGGAATTGCCTATGGAAAACCAACCTCCAGTGTTCACATCAGCAATGTTTACCTACAATCATCGTCAGGTGCTGGCTTGGCTTTTGGGAGTGAGATGTCTGGGGGAATATCAGATATTATTGCAGAAAAGCTTCATATACTTAACTCGCCTATAGGCATTGAACTGAAGACAACTAGAGGCAGAGGTGGCTATATGAAAGGCATCTTCATTTCTGATGCAGAATTGGAAAATATTCACTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGACGACAAGTATGACACAAGTGCACTTCCAGTTGTTGGTAGCATTACTTTCAAGAATGTGATGGGTGCAAATATTGATGTTGCTGGCAATGTTTCAGGAATAGCTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTTTCTCAGTTATGAGCTATCCCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCCGAGAAGGTGATTCCTGAGCCATGTCCCGATCTCCAGAGCTCTTATTCTAAGTACTCCTTTTCTTGCTTTACTTCCCTATATCCACAATTTAGTAATGTCTCAGGCTCTTCGGATCAAGAATTATAG 1449 0.4272 MQLFLHWFQNFVDSLQFQLVAAQAHMKGLVAVLLVVAICTAVESNGEENGGTCKRNALNARPHSVSILEFGAVGDGMTLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATILASQDYSHWDVLDSLPSYGRGIGRYRSLIYGQSLSDVVVTGDNGTINGQGSIWWTLFSSHSLNYSRPNLVEFVDSVDVIISNLTFVDAPAWGIHPVYCSNVQIQNITSRAPPESPYTSGIVPDSSKYVCIENSNISTGHDAIVLKSGWDEYGIAYGKPTSSVHISNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTRGRGGYMKGIFISDAELENIHLGISMTGYSGFHPDDKYDTSALPVVGSITFKNVMGANIDVAGNVSGIAESPFSTICLSNVTFFLSYELSPSWFCSNVIGFSEKVIPEPCPDLQSSYSKYSFSCFTSLYPQFSNVSGSSDQEL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2177 482 Pfam Glycosyl hydrolases family 28 154 437 IPR000743 GO:0004650|GO:0005975
Pvu1g2177 482 PANTHER POLYGALACTURONASE-RELATED 30 469 - -
Pvu1g2177 482 Gene3D - 48 437 IPR012334 -
Pvu1g2177 482 SUPERFAMILY Pectin lyase-like 58 453 IPR011050 -
Pvu1g2177 482 PANTHER PECTIN LYASE-RELATED 30 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2177 Pvu-Chr1 47399941 47403831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2177 26 464 Glycoside Hydrolase AT3G16850 59.685 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2177 - - gmx:100787190 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2177 1 47399941 47403831 Pvu1g2177 1 47399941 47403831 ECH
Pvu1g2177 1 47399941 47403831 Pvu7g2237 7 45647847 45651717 PCT