Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2193 ATGAATAGCGCCCGTCTGATTTCTGGTGGAGGATGGCTACTCCGGCGACTTTGCACGGCGGCTGAGAGTCCAGCGAAAAATCCAAACCTCTATCGAATATTATCGGCGTTGGACATGACTGGAGGAAGCGTGTCGGAAACTTTGAACAGCTATATAATGCAAGGGAAAGCCGTAAAAAAAACAGAACTCGAAAGATGTGTGGAGCAGCTCCGAAGATATCGCAAATTTCAGCATGCACTCGAGATAATAGAATGGATGGAAATGAGGAAAATTAACTTTTCCTGGAATAATTATGCAGTGCAATTAGATCTTGTGTCCAAGACCAAAGGGGTGGTTGAGGCTGAGAATTTTTTCAGTGGTCTTCCTGATCCAGCCAAGAACAAGTATACGTATGGTGCTCTCTTGAACTGTTACTGCAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTCACAAAATGGATGAATTGGGTTATGTCACTTCTCTGTCTTACAACAATTTGATGAGTCTGTTTATGAGAAATGGTGAACCTCAGAAAGTGCCTGAACTGGTGGGGGTAATGAAGAGGAGAAGCCTTCCCTTGTCTTCATTCACGTATCATATCTGGATGAACAGCTGCGCCTCTTCCGGAGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAGAACTGAAGAACTAATTAGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATGTAAAGGTTAAGGATTTTGAGAAGGCTGAAAAGATGCTTAAGATGCTGGAGAAACAAGTGAAGCCACGGCAGCGTGATGCTTACCATTGCTTGCTTGGCCTCTATGCTGGGACTGGTAATCTTGGAGAGGTACATAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGACCAATTTTAGCTATCTTATCATGCTTAGTACCCTCCGAAGGCTTAAGGATATAGAGGGCTTAACAAAATGCTTTAAGGAGTGGGAAGCTAGTTGTGTTACCTATGATGCGAGGCTAGTCGGTGTCTGTGTTAGTGCTTACTTGGGTCAGAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTAGCAGGAGGAGCAAAAGGCCTTTGTTTAGGATTGAAGAAATGTTCATGTTGTATTTCTTGGAGAAACGTCAGTTGGAGGCTGCTGTGAGGCACTTGCAGGCGGCGTTTTCAGAAGTCAAGGGTGATGATGAATGGCATCCTTCACCAAAAGTGGTTGGGGCTTTCCTGAAGTACTATGAAGAAGAGACGGATGTGGATGGTGTTGATGAGTTGTCTAAGATTCTCAAGGCTAACAATATTGATGATTCCTGGATTAAAACTTGCATTAATGCTTCCAAATCGTCTCTTGAAACTGATCCAAGATTGAAGGAAGATGATCTTCAAAACTACCTTGCGCAGGAGAACTAG 1431 0.4403 MNSARLISGGGWLLRRLCTAAESPAKNPNLYRILSALDMTGGSVSETLNSYIMQGKAVKKTELERCVEQLRRYRKFQHALEIIEWMEMRKINFSWNNYAVQLDLVSKTKGVVEAENFFSGLPDPAKNKYTYGALLNCYCKELMKDKALSHFHKMDELGYVTSLSYNNLMSLFMRNGEPQKVPELVGVMKRRSLPLSSFTYHIWMNSCASSGDLDGVERVYEEMRTEELISWQTYSNLAAIYVKVKDFEKAEKMLKMLEKQVKPRQRDAYHCLLGLYAGTGNLGEVHRVWNSLKSVSPVTNFSYLIMLSTLRRLKDIEGLTKCFKEWEASCVTYDARLVGVCVSAYLGQNMVEEAALVFEGASRRSKRPLFRIEEMFMLYFLEKRQLEAAVRHLQAAFSEVKGDDEWHPSPKVVGAFLKYYEEETDVDGVDELSKILKANNIDDSWIKTCINASKSSLETDPRLKEDDLQNYLAQEN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2193 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pvu7g2193 476 Pfam PPR repeat family 163 208 IPR002885 -
Pvu7g2193 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Pvu7g2193 476 SUPERFAMILY TPR-like 196 297 IPR011990 GO:0005515
Pvu7g2193 476 Gene3D Tetratricopeptide repeat domain 59 230 IPR011990 GO:0005515
Pvu7g2193 476 Gene3D Tetratricopeptide repeat domain 231 459 IPR011990 GO:0005515
Pvu7g2193 476 PANTHER OS12G0527900 PROTEIN 3 468 - -
Pvu7g2193 476 Pfam PPR repeat 233 259 IPR002885 -
Pvu7g2193 476 Pfam PPR repeat 129 158 IPR002885 -
Pvu7g2193 476 PANTHER OS01G0301500 PROTEIN 3 468 - -
Pvu7g2193 476 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Pvu7g2193 476 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2193 Pvu-Chr7 45225022 45226738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2193 30 468 EF-hand Containing Proteins AT1G02150 32.823 2.10e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2193 - - var:108325918 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2193 7 45225022 45226738 Pvu7g2193 7 45225022 45226738 ECH
Pvu7g2193 7 45225022 45226738 Pvu1g1999 1 45869573 45870556 PCT