Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2151 ATGAAGAGACTTTCAACTTTGCAGTTGGTGGGTGTGTTTCTGGTTCTTGCTTCGTTCAGTTGTAGCCCATGGACAGTGTGGGGCAGCTCGTACTGCAATCGGATAAACTTGAAGGAAGTCCGGCCTCACAGTGTCAGTATTACCGAATTTGGTGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGTGCCGAGCTTTTTGTCCCCGCAGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACACTGTGGTTGGACAACGATGCAGTAATTCTTGGTTCAACGAACTCCGAGGACTGGCCAATTGTGGAGCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATCGAAGCCTCATTTATGGGCGTAATTTGACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACATTGGGTTATACACGTCCTCATTTGGTCGAGTTGATGAATTCAACCGGGGTTCTCATTTCAAATGTAACTTTCTTGAACTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTACAATTCAAAATGTCACAGTCATTGCTCCTCATGGTTCACCAAATACAGATGGCATTAATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATCTCATTTGGTCGGCCCAGTACAAATATTAACATCCGCAGGCTCATTGGGAAAACAACGAGTGCCGGGATTGCTATCGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTAATTCACGTAGTGCAGTTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGGTATTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCTGATGACAATTACGACCAAGAAGCTCTACCGGTAATTGAAAGGATTACTATCAAGGATGTGATTGGGGAAAAAGTCAAACGTGCTGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATCACACTTCATGTGACCTCAAAATTGCCATGGAACTGCTCTTACGTTAAAGGATATTCTGACCTGGTTTCACCGGAAGCCTGTGAGCCTCTCAATGAGCGAATATCCCCTGAGCATTGTTCCGACTGTTGCTATGTACCAAACCACTTAACGAGTTTGGGGAATCAAAATTCGGGTGCTTGGGTTTAG 1395 0.4323 MKRLSTLQLVGVFLVLASFSCSPWTVWGSSYCNRINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAELFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSEDWPIVEPLPSYGRGRELPGGRHRSLIYGRNLTDVVITGNNGTIDGQGSIWWDKFRNKTLGYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTVIAPHGSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFNSRSAVRIKTSPGRGGYVRNVYISNMVLANVDIAIRFTGLYGEHPDDNYDQEALPVIERITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLHVTSKLPWNCSYVKGYSDLVSPEACEPLNERISPEHCSDCCYVPNHLTSLGNQNSGAWV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2151 464 SUPERFAMILY Pectin lyase-like 38 432 IPR011050 -
Pvu7g2151 464 SMART pbh1 300 321 IPR006626 -
Pvu7g2151 464 SMART pbh1 273 294 IPR006626 -
Pvu7g2151 464 SMART pbh1 212 238 IPR006626 -
Pvu7g2151 464 SMART pbh1 329 350 IPR006626 -
Pvu7g2151 464 SMART pbh1 239 271 IPR006626 -
Pvu7g2151 464 Pfam Glycosyl hydrolases family 28 140 419 IPR000743 GO:0004650|GO:0005975
Pvu7g2151 464 Pfam Pectate lyase superfamily protein 45 91 IPR024535 -
Pvu7g2151 464 Gene3D - 27 420 IPR012334 -
Pvu7g2151 464 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Pvu7g2151 464 PANTHER OS07G0245200 PROTEIN 10 450 - -
Pvu7g2151 464 PANTHER PECTIN LYASE-RELATED 10 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2151 Pvu-Chr7 44783089 44786988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2151 1 445 Glycoside Hydrolase AT3G62110 68.584 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2151 - - gmx:100786985 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2151 7 44783089 44786988 Pvu7g2151 7 44783089 44786988 ECH
Pvu1g2259 1 48101700 48105547 Pvu7g2151 7 44783089 44786988 PCT