Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2259 ATGAGGAGACCTTCAACACTCGTGGATGTGCTTCTGGTACTTGCATTGCTCAGCTGTAGCCCATGGATAGTATGGAGCAACACACTTTGCCAAGAGACAAACGACGAAGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCGGATGGTCGGTGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCTTATGGAAGAGGAAGAGAGTTGCCAGGTAAAAGGCATAAGAGCCTCATTTATGGGCGCAATTTGAGTGATGTGATCATAACAGGCAATAACGGGACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACACGTCCCCATTTGATAGAATTGATGAACTCAACAGGGGTCCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACACTCCATCCTGTGTATTGCAGCCATGTTACAGTTCAGAAAGTGACGATCTTTGCTCCTCTTGATTCTCCAAATACTGATGGGATTGATCCAGATTCTTCAGACAATGTTTGCATTGAAGACTGTTACATAAGCACTGGTGATGACCTGATTGCGATCAAGAGCGGGTGGGATGAGTATGGCATTAGATACGGTCGCCCCTGCACAAACATTATCATCCACAGGCTTGTTGGTAAAACTCAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATATAGAAGATATTCAATTCTACGATTCACATACTGCAATCAGAATAAAGACGTCTCCTGGAAGGGGGGGTTATGTTAGAAACATCTATGTCACAAACGTGACCTTGGCTAATGTGGATATTGCTATTAGGTTCACTGGTTTATATGGGGAACATCCAGATGATGCTTATGACCCAAAGGCTCTGCCTGTAATAGAAAAGATTACAATCAAGGATGTGGTGGGAGAGAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTGAACGTTTGCTTATCAAACATTGTCCTTAATGTGAGCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCTGACCTGGTTCTGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTCCCTGAGCATTGTTCAGATTGTTACTATTTGTCAAATCAAATTCAGAGTTCGAAGAGCCAAAATAGAGCAGGGCAAAGAAACTTCAGGTGA 1398 0.4292 MRRPSTLVDVLLVLALLSCSPWIVWSNTLCQETNDEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPDGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGKRHKSLIYGRNLSDVIITGNNGTIDGQGSIWWSMFRNKTLDYTRPHLIELMNSTGVLISNLTFLNSPFWTLHPVYCSHVTVQKVTIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIRYGRPCTNIIIHRLVGKTQTSAGIAIGSEMSGGVSEVHIEDIQFYDSHTAIRIKTSPGRGGYVRNIYVTNVTLANVDIAIRFTGLYGEHPDDAYDPKALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVSSNYPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYLSNQIQSSKSQNRAGQRNFR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2259 465 PANTHER PECTIN LYASE-RELATED 7 447 - -
Pvu1g2259 465 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Pvu1g2259 465 Coils Coil 465 465 - -
Pvu1g2259 465 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
Pvu1g2259 465 PANTHER OS07G0245200 PROTEIN 7 447 - -
Pvu1g2259 465 SMART pbh1 327 348 IPR006626 -
Pvu1g2259 465 SMART pbh1 270 292 IPR006626 -
Pvu1g2259 465 SMART pbh1 298 319 IPR006626 -
Pvu1g2259 465 SMART pbh1 236 268 IPR006626 -
Pvu1g2259 465 SMART pbh1 209 235 IPR006626 -
Pvu1g2259 465 Gene3D - 26 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2259 Pvu-Chr1 48101700 48105547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2259 1 459 Glycoside Hydrolase AT3G62110 67.880 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2259 - - gmx:100782602 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2259 1 48101700 48105547 Pvu7g2151 7 44783089 44786988 PCT