Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2100 ATGGGGACAGAAAACCCTGGTCGACCAGCCTTCCCTTCTAGACCACCCTTTGCTGGTACACAGGGTATGGCACCTTTTTCGTCAACTGGGACCATGGTTGGGTCAGAGCCTCCTTCTTTTAGACCTACTCCTCCTGCTCCTCCCTTGGCATCCACACCATTTTCATCATCTGCGCCACCGGGCCACTTTAATGACCCCTCAGTGTCTCATTATCCTTCCAATTTCTCACCTGCTGCTGGACCTTTCCAGCGTTTTCCGATGCCACAGTTCTCCTCAAATGCTCAAGCGCCTCCCCTGCGTGCTCCACTCATGGGACAACCAACATTTCAACCTTCTGCGGGTCAAACACAGTCTTTTCCGGCTTCTCTTCAGCCTCAGCCGCACACGCCTTTTGTTTCAATAGGGTCTCCCCCTCCTGCACTTCCAGGATCGAGTGTTCCTCCTGTGTTTCAGCCATCTTTTCCTGGATATCCGCAGAACCAGGCTGGTGCAGAAATGCTAAATCAAGGAAATTATGGGCCTGTCCATGCACCACCTATGCCTTTTCACCCTCACCAAGGAGGTTATGTTTCGCAGCCCCCAATGGCTGCTCCGCCAGGCACCCAGCCCATGCGATCTGAACCGCCTACGGGTGTCCTTGGTGGCTTGACTGAAGACTTTAATTCGCTATCAATTCAAACTCGTCCTGGACTCATGGAGCCGTCCATCGATGTTAAAGAATTGCCAAGGCCATTGGAAGGCGATGAGGAGCAAAAGTTTTTATCTGATGTGTATCCCATGAACTGCAATCCTAGATATCTACGACTCACAACCAGTGGAATGCCTAACTCCCAGTCCTTATGTTCAAGGTGGCATCTTCCACTTGGAGCAGTTGTATGTCCACTTGCAGAGTCTCCTGATGTGGAAGAGGTACCCATAGTTAATTTTACTGCAACTGGTGTCGTACGCTGTAGGAGATGCCGCACATATGTGAATCCCTATGTCAAATTTACTGAAGGCGGAAGAAAGTTCCGGTGCAACAACTGCTCCTTGCTTAATGACGTTCCTAGTGAATATTATGCACCATTAGATGCCACTGGCAGAAGAGTTGATTTGAATCAACGACCTGAGCTTACAAACGGTACTGTAGAATTTGTTGCCCCAGCAGAATATATGGTGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTTATTGATGTTTCCATATCTGCGGTTAGAAGCGGAATGATTGAGGTTGTGGCTGAAACAATCAGGTCATGTTTAGATGAGCTTCCGGGCTTTCCACGAACACAAATAGGGTTTGCAACTTTTGACAGTGCAATACATTTTTATAACATGAAGTCATCCTTGACACAACCACAAATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCAGATGATCTTCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAGCGTTTCTTGATAGTCTACCATCCATGTTCCAGGACAATGTGAATCTGGAATCTGCTTTTGGTCCTTCTCTGAAGGCTGCCTTTGCGATTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGCTGGCCGATTGAAACTACGTGGAGATGATTCTAAAGTTTATGGCACAGATAAAGAACATGTGTTAAGATTGCCAGAAGATCCCTTTTACAAACAAATGGCTGCTGAGTTTTCTAAATTCCAAATCTCAGTTAATGTGTATGCATTCAGTGATAAGTACACCGACATAGCATCCCTAGGAACTCTGGCAAAGTATACCGCTGGTCAACTGTATTACTATCCAGCTTTCCAATCAGTCATTCACGGGGAGAAACTAAGAAATGAGCTAAGGAGAGACCTTACCAGAGAAACTGGCTGGGAAGCTGTATTGCGAATTAGATGTGCAAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAGATTTATTAGCACTTCCAGCTGTGGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAAACATCATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGTTGTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACATACAGCTGCGGCTCCAGTAGTGTCAGAATTGGTAGACATGTATCGCTTGGCTGATACTGGTGCAATTTTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACATTATCCCATAAACTGGAAGAAGCCAGGAGTGCTGTACAACTAAGAATTGTGAAAGGCCTCCGAGATTATCGAAATATCTATGCTGGGCAACATCGTTTGGTGAATAGGATGGTATATCCTGAGTCATTAAAGTTCCTAACCTTGTATGGCTTAGCTCTTTGTAGATCAGCACCTCTCCGTGGTGGGTATGGGGATGTTTCACTAGATGAACGGTGTGCTGCTGGACACACAATGATGACCCTACCAATAAAAAGGATGTTGAAACTTCTCTACCCTAGTTTGCATCGACTTGATGAATATCTTCTAAATGCTGATGACTTGAGAAGCATTGACAGAAGGTTACCTTTGACTGGGGAGAGCTTGGATTCTAGGGGCCTTTATATATATGACGATGGCTTCCAGTTCATTTTATGGTTTGGTAGAGTGATTTCACCTGACATAGCTAAAAACTTACTTGGGTCTAACTTTGCAGCAGAGTTATCAAAGGTTACTCTAAATGAGAATGAGAATGATAATGAGATGTCCCGGAGGCTGATAAAGGCACTTGAGAAGCTCAGAAGTACTGACCGTGCATATTACCAGTTGTGCCGCCTTGTGAGGCAAGGTGAACACCCCAGAGAAGGATTCCTTCTTCTTTCAAACCTGTTTGAGGATCAGATGGGTGCTAATAATGGATATGCTGATTGGATAATACAGATTTCCCGACAAGTGCAGCAATCATAA 2949 0.4486 MGTENPGRPAFPSRPPFAGTQGMAPFSSTGTMVGSEPPSFRPTPPAPPLASTPFSSSAPPGHFNDPSVSHYPSNFSPAAGPFQRFPMPQFSSNAQAPPLRAPLMGQPTFQPSAGQTQSFPASLQPQPHTPFVSIGSPPPALPGSSVPPVFQPSFPGYPQNQAGAEMLNQGNYGPVHAPPMPFHPHQGGYVSQPPMAAPPGTQPMRSEPPTGVLGGLTEDFNSLSIQTRPGLMEPSIDVKELPRPLEGDEEQKFLSDVYPMNCNPRYLRLTTSGMPNSQSLCSRWHLPLGAVVCPLAESPDVEEVPIVNFTATGVVRCRRCRTYVNPYVKFTEGGRKFRCNNCSLLNDVPSEYYAPLDATGRRVDLNQRPELTNGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAETIRSCLDELPGFPRTQIGFATFDSAIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVEAFLDSLPSMFQDNVNLESAFGPSLKAAFAIMSQLGGKLLIFQNTLPSLGAGRLKLRGDDSKVYGTDKEHVLRLPEDPFYKQMAAEFSKFQISVNVYAFSDKYTDIASLGTLAKYTAGQLYYYPAFQSVIHGEKLRNELRRDLTRETGWEAVLRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETSLTTQTMYFQVALLYTASCGERRIRVHTAAAPVVSELVDMYRLADTGAILSLFSRLAIEKTLSHKLEEARSAVQLRIVKGLRDYRNIYAGQHRLVNRMVYPESLKFLTLYGLALCRSAPLRGGYGDVSLDERCAAGHTMMTLPIKRMLKLLYPSLHRLDEYLLNADDLRSIDRRLPLTGESLDSRGLYIYDDGFQFILWFGRVISPDIAKNLLGSNFAAELSKVTLNENENDNEMSRRLIKALEKLRSTDRAYYQLCRLVRQGEHPREGFLLLSNLFEDQMGANNGYADWIIQISRQVQQS* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2100 982 Gene3D Sec23/Sec24 helical domain 715 979 - -
Pvu7g2100 982 Gene3D - 262 714 - -
Pvu7g2100 982 SUPERFAMILY beta-sandwich domain of Sec23/24 150 724 - -
Pvu7g2100 982 MobiDBLite consensus disorder prediction 1 144 - -
Pvu7g2100 982 MobiDBLite consensus disorder prediction 55 76 - -
Pvu7g2100 982 SUPERFAMILY Zn-finger domain of Sec23/24 302 388 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pvu7g2100 982 Coils Coil 907 927 - -
Pvu7g2100 982 PANTHER SEC24-RELATED PROTEIN 36 981 - -
Pvu7g2100 982 Pfam Sec23/Sec24 trunk domain 389 625 IPR006896 GO:0006886|GO:0006888|GO:0030127
Pvu7g2100 982 MobiDBLite consensus disorder prediction 108 130 - -
Pvu7g2100 982 PANTHER OS04G0129500 PROTEIN 36 981 - -
Pvu7g2100 982 MobiDBLite consensus disorder prediction 38 54 - -
Pvu7g2100 982 Pfam Sec23/Sec24 helical domain 726 829 IPR006900 GO:0006886|GO:0006888|GO:0030127
Pvu7g2100 982 CDD Sec24-like 389 630 IPR041742 GO:0006886|GO:0006888|GO:0030127
Pvu7g2100 982 Gene3D von Willebrand factor, type A domain 391 628 IPR036465 -
Pvu7g2100 982 Gene3D Severin 834 960 IPR029006 -
Pvu7g2100 982 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 845 981 IPR036180 -
Pvu7g2100 982 Pfam Sec23/Sec24 beta-sandwich domain 631 714 IPR012990 -
Pvu7g2100 982 SUPERFAMILY vWA-like 389 629 IPR036465 -
Pvu7g2100 982 Pfam Sec23/Sec24 zinc finger 315 352 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pvu7g2100 982 SUPERFAMILY Helical domain of Sec23/24 726 833 IPR036175 GO:0006886|GO:0006888|GO:0030127
Pvu7g2100 982 MobiDBLite consensus disorder prediction 22 36 - -
Pvu7g2100 982 Gene3D - 260 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2100 Pvu-Chr7 44318565 44329927 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2100 K14007 - gmx:100791083 1493.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2305 1 48509813 48519865 Pvu7g2100 7 44318565 44329927 PCT