Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2305 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTCCCTTCAAGGCCTTCTCCACCGCCTTTTCCTGCTGCACAGACAGTGACACCTTTTTCATCAACCGGTTCCGTGGTTGGATCAGAGCCTCCTTCTTTTCGGTCCGCTCCTCCGGCTCCTCCGCCGCAAGCTGCCACGCCATTTTCCTCAGCCGGACCTGCTGCAGTTAGACCAGGGGCACCCAGTTTTAGGCCTGCACCGCCAGGGAGGTTCAATGATCCGTCAGTGCCTCCTCCTCCTCCTCAATCATCCAATGCCCCGCCGGCTGCTGGACCCTTTCAGCAGTTTCCGGCAGCGCCCTTCGCCCCGACAACGCAGCCACGTGCTCCTCCTTTGTCTATGGGACAACCATCATTTCAATCTCCACCTAGTCTAGCACCGCCATTTGCCACGTCTCTTCCAGCTCAGCCACAGATGCCTTTTGTTCCAATGGGTTCTCCCTCACCTCAAAGTGCTGCTCCTGCGCATATGGGTTCAAATGTTCCTCCACCTACATTTCAGCCAGCTTTTCCTGGGTACCCGAGTAAGCAGACTGGTCCTGAAATGCAAGGTCCACCTTTGCATTCCTCATTCCCTGCTAATCAAGGAAATTTTGGGCCTGTTCCACCTGCTGGAGCTTCTCCTTTTTTGTCTCATCAAGGAGGTTATGTTTCATCTCCCCCAGTGGCTCCTCCGCTTGGTATCCAGCCAATGCAGCAGCAACCTGGATCTCTGCCCCCTATGAGTAATGTTCACGGGTTGGCAGAAGACTTCAATGCCCTCACAATGCAAACTCGTCCTGGAACAATGGATCCATTATTTGACCCCAAGGAACTTCCAAGGCCATTGGAAGGTGATGTTGAGCCAAAGAATTTGCTTGACATGTATCCCATGAACTGCAATCCCCGGTTTCTACGACTCACGACCAGTGCCGTACCAAGCTCCCAGTCCTTGGCTTCTAGGTGGCACCTTCCACTTGGAGCAGTTGTATCTCCGCTTGCTGAACCTCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCTAGTGTTGTTCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACAGAAGCAGGAAGAAAGTTCCGTTGCAACGTCTGTACCTTGCTTAACGATGTTCCTAGTGAATATTATTCACAATTAGATGCCACTGGAAAAAGGGCTGACATAAATCAACGGCCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAGTCATGCTTGGATGAGCTGCCTGGCTTTCCACGTACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCCTGACTCAACCACAGATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCGCTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGACACCTTCTTAGATAGTTTGCCAACCATGTTCCAGGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACTCACTCCCATCACTTGGTGTTGGCCGTTTGAAGTTACGGGGAGATGATTCTCGTGTTTACGGGACTGACAAAGAACATGGACTGAGGCTGCCTGAAGATCCATTTTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAGCAAATGTTTATGCATTCAGTGATAAGTACACAGACGTAGCATCCTTGGGAACTCTGGCAAAATATACTGCTGGTCAAGTGTATTTCTATCCAGCTTTCCAAGCAGCTATTCATGGGGATAAATTGAGACATGAATTACGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTGGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCTATGCAGTTATCACTTGAAGAGACATTGTTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACAGAGTTGGCAGATCTTTATCGTCTGGCTGATACTGGTGCTATTGTATTGCTGTTAAGCAGGCTAGCAATTGAGAAAACATTATCCCAAAAACTGGAAGACGCTCGGACTGCTGTTCAACTAAGAATTGTGAAAGCCCTCAGGGAATATCGGAATCTTTATTCTGTGCAACATCGTTTGTCCAACAGAATGATATATCCTGAGTCTCTAAAGTTCCTAATTTTGTATGGATTAGCGCTGTGTAGATCAACAACTCTACGTGGAGGATTTGGTGATGTTCCACTGGATGAAAGATGTGCGGCAGGACACATAATGATGACTGTATCAATAAAAGGACTGTTGAAACTTCTCTATCCAAGTTTGATTCGACTTGATGAATATCTTCTGAAGGCATCTGTACAGGCTGATGACTTAAAAAGTGTTGAGAGAAGGTTACCTTTGACAGGGGAGAGCTTAGATTCTAGGGGCCTTTATTTATATGATGATGGTTTCCGTTTCATTATATGGTTTGGTAGGGTGATTTCACCGGATATAGCCAAGAATTTACTTGGGCCAGACTTTGCAGCAGAATTATCGAAGACTACACTCAGTGAGCATGACAATGAAATGTCAAGGAGATTGATGAAGTTACTTGAGAAGTTGAGAAATGCAGATCGTGCATATTACCAGTTATGCCACCTTGTGAGGCAAGGTGAACAGCCCAAAGAAGGGTTCCTCTTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAACAGTGGGTATGCTGAATGGATGTTACAGATATCCCGGCAAGTGCAGCAATCATAA 3078 0.4578 MGTENPGRPTFPSRPSPPPFPAAQTVTPFSSTGSVVGSEPPSFRSAPPAPPPQAATPFSSAGPAAVRPGAPSFRPAPPGRFNDPSVPPPPPQSSNAPPAAGPFQQFPAAPFAPTTQPRAPPLSMGQPSFQSPPSLAPPFATSLPAQPQMPFVPMGSPSPQSAAPAHMGSNVPPPTFQPAFPGYPSKQTGPEMQGPPLHSSFPANQGNFGPVPPAGASPFLSHQGGYVSSPPVAPPLGIQPMQQQPGSLPPMSNVHGLAEDFNALTMQTRPGTMDPLFDPKELPRPLEGDVEPKNLLDMYPMNCNPRFLRLTTSAVPSSQSLASRWHLPLGAVVSPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYSQLDATGKRADINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVDTFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDVASLGTLAKYTAGQVYFYPAFQAAIHGDKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTELADLYRLADTGAIVLLLSRLAIEKTLSQKLEDARTAVQLRIVKALREYRNLYSVQHRLSNRMIYPESLKFLILYGLALCRSTTLRGGFGDVPLDERCAAGHIMMTVSIKGLLKLLYPSLIRLDEYLLKASVQADDLKSVERRLPLTGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKNLLGPDFAAELSKTTLSEHDNEMSRRLMKLLEKLRNADRAYYQLCHLVRQGEQPKEGFLFLANLVEDQMGGNSGYAEWMLQISRQVQQS* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2305 1025 Pfam Sec23/Sec24 trunk domain 430 666 IPR006896 GO:0006886|GO:0006888|GO:0030127
Pvu1g2305 1025 SUPERFAMILY Zn-finger domain of Sec23/24 346 429 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pvu1g2305 1025 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 884 1024 IPR036180 -
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 25 39 - -
Pvu1g2305 1025 Gene3D Severin 875 1003 IPR029006 -
Pvu1g2305 1025 SUPERFAMILY Helical domain of Sec23/24 767 874 IPR036175 GO:0006886|GO:0006888|GO:0030127
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 131 154 - -
Pvu1g2305 1025 PANTHER OS04G0129500 PROTEIN 35 1024 - -
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 70 97 - -
Pvu1g2305 1025 Pfam Sec23/Sec24 helical domain 767 870 IPR006900 GO:0006886|GO:0006888|GO:0030127
Pvu1g2305 1025 Pfam Sec23/Sec24 zinc finger 356 393 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pvu1g2305 1025 CDD Sec24-like 430 671 IPR041742 GO:0006886|GO:0006888|GO:0030127
Pvu1g2305 1025 Gene3D - 301 414 - -
Pvu1g2305 1025 SUPERFAMILY beta-sandwich domain of Sec23/24 113 765 - -
Pvu1g2305 1025 Gene3D Sec23/Sec24 helical domain 756 1022 - -
Pvu1g2305 1025 Pfam Sec23/Sec24 beta-sandwich domain 672 756 IPR012990 -
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 192 206 - -
Pvu1g2305 1025 Gene3D von Willebrand factor, type A domain 432 669 IPR036465 -
Pvu1g2305 1025 Gene3D - 303 755 - -
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 43 57 - -
Pvu1g2305 1025 PANTHER SEC24-RELATED PROTEIN 35 1024 - -
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 1 251 - -
Pvu1g2305 1025 MobiDBLite consensus disorder prediction 10 24 - -
Pvu1g2305 1025 SUPERFAMILY vWA-like 430 669 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2305 Pvu-Chr1 48509813 48519865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2305 K14007 - gmx:100791083 1796.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2305 1 48509813 48519865 Pvu7g2100 7 44318565 44329927 PCT