Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1470 ATGGGCATTCCCATGGAAGGGTTGGCGTTTCTTCCATTTGCACACTCACAACTCCTCCTCCCGCTTCCAAAGCTTGCCGCCATTTCCAGTCCTAACAATATTAATAATACCAATGGATTTGTGTTCCTCAGACCGCACCGTCGACGCTGCTTTCGTTTTCGCACTTCATTGTTTTCCAAGGCACAGGTCCTTCCTCTTCCCCAACACCAACAGCAACGGCAACAAGTCACAGTGAATCGCAATTGTGTGAGTGGGGATTCCATACGTCAGAGATTTCTTCATTTTTATGCTTCCCGCGGTCACAACCTCCTTCCCAGTGCTTCTCTCGTCCCCGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCACAGAGATGCATCCGTACTAATGATATCGACAAAGTTGGCCTAACTTCCAGACATCATTCCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCGTGGGAGCTTTCCACCTCAGAGTTTGGTTTGCCACCGGACCGATTGTGGGTTAGTGTTTATGAAGATGATGATGAAGCTTTTCAGCTATGGTCTGATGAGATTGGTGTCCCAGTTGAACGTATAAAAAGGTTGGGAGAAGAAGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGCCCTTGCTCAGAAATTTATTATGATTTTCATCCCGAGAGGGGATATGTAGATGCTGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACTTAGTCTTCATGCAATACAACAAAAAGGATGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGACACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTACAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGGAGGCCTCTAAGTTAGCAAATGTTTCTTATGGTATTGCTGATGATCAGACAAAGAGGAATCTCAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAATTGTCCCATCAAATGTTGGGAGAGGTTATGTGGTTCGACGGCTTATTAGAAGGGTTGCTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATAGTAGGGGAGACCTTGAAGGAGCGTTTTTACCAATTATTGCTGAGAAGGTTGTGGAATTAAGTACCCACAGTGAGGCTGATGTGAAGAACAAAGCGCCTCGTATCTTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTTCTGATGCCTTATCAAGTGCAGAGAGAAATGGAACTGTTCCTTGCATGGCTGGCGAAGATGTGTTTCTATTGTATGATACTTATGGATATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACATGGTGTGAGTATCGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACATAATACTGTCAAGCTTACCATTGAAAATGGGGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGACTTCATTGTAAAGCAATGATAGAAAGCCTCATGGTGAATGGAAATCCAGCTGTCCAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAATAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGATGATCAACCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAATCATTAGGCAACATATTTGTGCATAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATATGAAGCTGAGACAGCGAGCTAAGGTCCATCATACTGCTACTCATTTACTACAAACTGCCCTTAAAAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCACTGGTGGCATTTGATTGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCATGATTCTGAACTTGCTGAAATTGAAGTGCTAATTAATGGATGGATTGAAGATGCAACACTACTTCAAACCAAAGTGATGCCTCTCGCTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTCGTAGAGATTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCACGTCAATAATACTTCTGAAATTTGCGGTTTTAAAATAATATCAGAACAGGGTATTGCATCTGGAATCAGGCGTATTGAAGCTGTAGCTGGTGAAGCCTTCATTGAAAATATCAATGCCCGAGACTTTTATCTAAAGCAGCTATGTTCCACTCTCAAAGCAAACTTTAAATCAACCTTATCTACGGAATCGCTTCTTACTAATGAGGAGGCTGTAATAGATGCTGCTGCATCTGAAGCCCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGCTTTACTAGTAAAAAAGAAGCCCCAAGCAGAAGCAGAGTATAGATCCCATGTTTCTTCAAAATCTGATGATTTATTTCTCAAATGGTTTCAACATATGGATGTGGAAGATGGTGTAGCAGGGGAATCCATGGGTGCTGGAGCAGAAATGATGGAAGGTGTTGACCTAAGCCCCAGTGAAGAGGAATCTGATGTAGAACCTTCCCATGAGGAACTTGAGAGCCTGCAGGAACAACTTTCCAACTGTATAGCTGTAAGATCTAGGCGCCAACCAGAAAGAAAAGCTAAAAGAGTCAGAGCAGCAGAGAAGGCTTCCACAAATGTTGCATCTTTTAAGCCTGGCTCCTCCAGCAGAAAAAAGCGTGTTTCCATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACAACCACTACTTCTAGGCTTCTCACCTCAACTGAAGAAATCAAGTTGTCAGAAGGAATACAGGACCTTCTAAAGCTTGAAAGAATCCAGGAGGATCTTGTAGAAAGATGTGGTGGTCAGCCCACATTTGCTCAATGGGCTGCGGTGGCAGGGGTAGATCAGAAGACACTTAGGAAACGTTTAAGTCATGGTAGATTTTGCAAAGACAAAATGATTAAAAGCAATATAAGACTTGTCATATCAATTGCAAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTTGTAAAAGGTGCTGAAAAGTTTGATGGTACCAAGGGTTTCAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCAAGAAAACAATTGTACAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAGCTGGGTTGTCTATGAAGAGGCTTACTGCTGTACTTTTGACTCCAAAAGCTCCCAGATCTCTGGAACAGAAGATTGGAATCAACCAAAATCTTAAACCTTCAGAAATAATTTCTGATCCTGACGCTGAAACAACTGAAGAACAGCTCCTTAAGCAATTCATGAAGAAGGACCTGCAAGAGGCACTGGACAGTCTTACTTTAAGGGAGAGACAGGTGGTAAGATGGAGATTTGGCATGGATGATGGAAGGACGAAGACCCTACAACAGATAGGGGAGATGATGGGTGTGAGTAGGGAGAGAATTAGGCAAATTGAGTCGAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAAACATTTCCAGCAGTATTTGGTTCCATAA 3909 0.428 MGIPMEGLAFLPFAHSQLLLPLPKLAAISSPNNINNTNGFVFLRPHRRRCFRFRTSLFSKAQVLPLPQHQQQRQQVTVNRNCVSGDSIRQRFLHFYASRGHNLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIDKVGLTSRHHSFFEMLGNFSFGDYFKKQAILWAWELSTSEFGLPPDRLWVSVYEDDDEAFQLWSDEIGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQQVPNNYETDLIFPIIEEASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGIVPSNVGRGYVVRRLIRRVARTGRLLGIKGDSRGDLEGAFLPIIAEKVVELSTHSEADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLSDALSSAERNGTVPCMAGEDVFLLYDTYGYPMEITKEVAEEHGVSIDMDGFDIEMEKQRRQSQAAHNTVKLTIENGENIAENVPDTEFIGYDRLHCKAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGDDQPKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDMKLRQRAKVHHTATHLLQTALKKVIGQETSQAGSLVAFDCLRFDFNFHRPLHDSELAEIEVLINGWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEIPGVSMELCGGTHVNNTSEICGFKIISEQGIASGIRRIEAVAGEAFIENINARDFYLKQLCSTLKANFKSTLSTESLLTNEEAVIDAAASEALALAKAAVKVAKDAALLVKKKPQAEAEYRSHVSSKSDDLFLKWFQHMDVEDGVAGESMGAGAEMMEGVDLSPSEEESDVEPSHEELESLQEQLSNCIAVRSRRQPERKAKRVRAAEKASTNVASFKPGSSSRKKRVSMQEVDYSDPLRYLRTTTTTSRLLTSTEEIKLSEGIQDLLKLERIQEDLVERCGGQPTFAQWAAVAGVDQKTLRKRLSHGRFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEAAGLSMKRLTAVLLTPKAPRSLEQKIGINQNLKPSEIISDPDAETTEEQLLKQFMKKDLQEALDSLTLRERQVVRWRFGMDDGRTKTLQQIGEMMGVSRERIRQIESSAFKKLKNKKRTKHFQQYLVP* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1470 1302 CDD AlaRS_core 86 315 - -
Pvu7g1470 1302 Pfam Sigma-70 region 2 1068 1137 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pvu7g1470 1302 Pfam Sigma-70, region 4 1236 1288 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pvu7g1470 1302 Gene3D Bira Bifunctional Protein; Domain 2 83 316 IPR045864 -
Pvu7g1470 1302 Gene3D - 659 791 - -
Pvu7g1470 1302 PRINTS Alanyl-tRNA synthetase signature 151 162 IPR002318 GO:0000166|GO:0005737
Pvu7g1470 1302 PRINTS Alanyl-tRNA synthetase signature 273 284 IPR002318 GO:0000166|GO:0005737
Pvu7g1470 1302 PRINTS Alanyl-tRNA synthetase signature 300 313 IPR002318 GO:0000166|GO:0005737
Pvu7g1470 1302 PRINTS Alanyl-tRNA synthetase signature 351 367 IPR002318 GO:0000166|GO:0005737
Pvu7g1470 1302 PRINTS Alanyl-tRNA synthetase signature 375 388 IPR002318 GO:0000166|GO:0005737
Pvu7g1470 1302 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 749 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pvu7g1470 1302 SUPERFAMILY Translation proteins 543 648 IPR009000 -
Pvu7g1470 1302 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 1136 1187 IPR013324 -
Pvu7g1470 1302 TIGRFAM alaS: alanine--tRNA ligase 88 838 IPR002318 GO:0000166|GO:0005737
Pvu7g1470 1302 Gene3D - 1222 1302 IPR036388 -
Pvu7g1470 1302 MobiDBLite consensus disorder prediction 912 932 - -
Pvu7g1470 1302 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 1200 1298 IPR013324 -
Pvu7g1470 1302 Pfam Sigma-70 region 3 1147 1223 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pvu7g1470 1302 SUPERFAMILY Class II aaRS and biotin synthetases 85 319 IPR045864 -
Pvu7g1470 1302 Gene3D - 720 773 - -
Pvu7g1470 1302 Hamap Alanine--tRNA ligase [alaS]. 84 968 IPR023033 GO:0004813
Pvu7g1470 1302 Pfam tRNA synthetases class II (A) 88 651 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Pvu7g1470 1302 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 989 1138 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pvu7g1470 1302 MobiDBLite consensus disorder prediction 948 983 - -
Pvu7g1470 1302 SMART tRNA_SAD_4 749 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pvu7g1470 1302 Gene3D - 1141 1217 IPR036388 -
Pvu7g1470 1302 Gene3D RNA Polymerase Primary Sigma Factor 792 1140 - -
Pvu7g1470 1302 Gene3D - 569 648 - -
Pvu7g1470 1302 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 1066 1290 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pvu7g1470 1302 SUPERFAMILY ThrRS/AlaRS common domain 648 805 IPR018163 GO:0000166
Pvu7g1470 1302 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 84 866 - -
Pvu7g1470 1302 ProSitePatterns Sigma-70 factors family signature 2. 1261 1287 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu7g1470 1302 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 83 805 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Pvu7g1470 1302 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 320 530 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Pvu7g1470 1302 CDD Sigma70_r4 1230 1283 - -
Pvu7g1470 1302 PANTHER ALANYL-TRNA SYNTHETASE 84 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1470 Pvu-Chr7 35345049 35353671 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1470 K01872 - gmx:100817906 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1470 7 35345049 35353671 Pvu1g1851 1 44245126 44250698 PCT