Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1851 ATGTTCTCTTCCTCTCCACCGTTTCCTTCATCTTCTTCGCCTTCAGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCATCCTGGTCTTCTAGTTCTACAGCTCGGCATTTTCCTACCTCTGTCCTCTTACAAGAACAGCGTGAGGAGTATAGGCCCCTACTGCACGTGAATAATAAGGAGGCAACATTAAATACAAGGCAGATGGATATGACCTCAGTTCAAGAAAAAAGTAACACAGGCAATCCTGATCCGTTAGTGCATGATTTTGTTCACCAGTTGCATCTCCGTTCTCATTTACAGAACTTATTGACTTGTTATCCAACTAGAGGAATTGCTGCTTCTTTGACTCTTCAGCCTGTTGATAATGATTCAGAGAGGCCTGCAGATGGTCTGCCAAGAAATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCAGCCTCATCAGTTGAAGTTGATGACGATGATGTTGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGGTGTCGATTCACTAAAAAGGAATAAAATTGTGAGGTCAACACGGATTATAGAAAGACGATCTAAACAGAGAAAAACATCAAAGTCAAAGCTTCTTGATGAAGAAAGTTTCCTTGAAAGAAAATCTTATGTACAGAGAAAGTTACGTTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAACGACCCCCTGCGCATGTTCTTGTCGGATCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTATCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGATAAGGCGGGAACCAACTTTAGCTGAATGGGCTGATGTATTGGGCCTTAGTTGTTGTGCCCTGCAGACACAACTTCATTGTGCTAACAGAAGCAAAGAAAAACTGTTTCATGCCAATATGCGCATGGTAGTTCACATTGCTAAATATTATCAGGGACGTGGTCTCAACCTTCAGGACTTATTACAGGAGGGAAGTACGGGTCTTTTGAAGAGCATTGACAAGTTTAAACCTGGAGGTGGTTGCCGGTTTGGTACTTACGCATACTGGTGGATAAGGCATTCAATAAGGAGGGCAATATTTCTACATTCCAGGACAATCCGTGTGCCGGAGAATTTATATAGACTTTTGGGCAAGGTCCTAGAAGCAAAGAAATCATTCATTCAGGAGGGAAACATTCACCCATCCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAGTAGACAAGTTGGAAAATTTACTATTTACTTCAAGAAATCCAATTTCCATGCAGCAAAGTGTGTGGGCGGACCAAGAGACAACTTTCCAGGAGATTACTGCAGACTCGGCAATTGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGGAGGCATGTGCACAACCTCCTAAATATGTTAAGCCCTAAAGAAAAGAGCATACTCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAAAAAACGTTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAAAGGGTCCGACAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGGACTGTCTTGAAAGTCAAGGACTTGACTCATACATAGACTTGCTTATATAG 1653 0.4211 MFSSSPPFPSSSSPSVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHVNNKEATLNTRQMDMTSVQEKSNTGNPDPLVHDFVHQLHLRSHLQNLLTCYPTRGIAASLTLQPVDNDSERPADGLPRNAVSLAQQALSASKQAASSVEVDDDDVDPLSFGLASTSLGVDSLKRNKIVRSTRIIERRSKQRKTSKSKLLDEESFLERKSYVQRKLRLEKKLNEGFDQNDPLRMFLSDPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQIRREPTLAEWADVLGLSCCALQTQLHCANRSKEKLFHANMRMVVHIAKYYQGRGLNLQDLLQEGSTGLLKSIDKFKPGGGCRFGTYAYWWIRHSIRRAIFLHSRTIRVPENLYRLLGKVLEAKKSFIQEGNIHPSKEELARRVGITVDKLENLLFTSRNPISMQQSVWADQETTFQEITADSAIEIPDVCVSKQLMRRHVHNLLNMLSPKEKSILRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKDCLESQGLDSYIDLLI* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1851 550 CDD Sigma70_r4 476 534 - -
Pvu1g1851 550 ProSitePatterns Sigma-70 factors family signature 2. 507 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 Gene3D - 470 549 IPR036388 -
Pvu1g1851 550 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 387 460 IPR013324 -
Pvu1g1851 550 Pfam Sigma-70 region 2 314 378 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 Gene3D - 387 464 IPR036388 -
Pvu1g1851 550 Pfam Sigma-70, region 4 483 534 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 234 384 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 Gene3D - 171 383 - -
Pvu1g1851 550 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 312 537 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 Pfam Sigma-70 region 3 394 466 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 8 550 - -
Pvu1g1851 550 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 8 550 - -
Pvu1g1851 550 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 446 546 IPR013324 -
Pvu1g1851 550 PRINTS Major sigma-70 factor signature 338 351 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 PRINTS Major sigma-70 factor signature 362 370 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 PRINTS Major sigma-70 factor signature 486 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 PRINTS Major sigma-70 factor signature 507 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g1851 550 PRINTS Major sigma-70 factor signature 522 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1851 Pvu-Chr1 44245126 44250698 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1851 - - gmx:100815699 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1851 1 44245126 44250698 Pvu1g1851 1 44245126 44250698 ECH
Pvu1g1851 1 44245126 44250698 Pvu7g1539 7 36816779 36822277 PCT
Pvu7g1470 7 35345049 35353671 Pvu1g1851 1 44245126 44250698 PCT