Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1163 ATGTCTCGAATCTTCTCTGCATGGAACAAGAAGAAGCTGCATCTCAATTTCTTACCCAGTTTTTTCTCTTCTTGGCACAGCACCAGCACTGGGCTTTTACGGCCCACAATTCTCAGACTCTACTGTAGCAGCAATGGGGAGCCACCACAGGACTGGCCTCAGGACGCTGCCGTGCCTTCGCAAACTCCTTTCAGTGTTAATTTTGTTCGGGCCTCCTCTGGGCCCCGCCAAGAGAACACTGGGTGGCTCGGAGGCTCCAATTTGGGTAGGGATTTTCCAACTCCCAAGGAAATCTGCAAGGGTCTCGATAAATTTGTTATTGGGCAACACAGGGCCAAGAAGGTGCTCTCTGTAGCGGTTTATAATCACTACAAGAGAATATTCAACGGGTCAGGGGAGGATGCGGGAATCTCCGAAGGATTGGATGATGACGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCAGGGAAGACATTACTTGCGAAAACACTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCCGGTTATGTTGGAGAAGACGTTGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCAAAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAAAAGGCTGAGAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTCCCCGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACGAAGAACATTCTCTTTATATGTGGTGGAGCATTTGTTGATCTTGAAAAAACCATTTCCGAGAGACGGCAAGATTCTTCAATTGGTTTTGGAGCACCAATCCGTGCCAATATGAGAACTAGTGGAGTTACATATGCTGCAGTAACATCAACTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATCCCAGAGTTTATAGGACGGTTTCCAATCTTAATTAGCTTGTCAGCTCTAACTGAAGACCAACTTATGCAGGTTCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACAAGAAGTTATTTGACATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCGATGGGCAAAAATACAGGTGCCAGGGGTTTAAGAGCCCTACTGGAAATCATTTTAACGGAAGCTATGTTTGAGATTCCAGATGTTAAAGCTGGAAATGAATTGATTGATGCGGTTGTTGTTGATGAGGAGTCAGTAGGATCCGTAAATTCCCCTGGCTGTGGCGGAAAAATTCTTTGTGGAGATGGTGCTTTAGATCTGTACCTAGCTAAGATGGAGGGTTCAGTGGTTAACCATGACGTAGCTGAACCAGACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCTATGAGCATGTGA 1518 0.442 MSRIFSAWNKKKLHLNFLPSFFSSWHSTSTGLLRPTILRLYCSSNGEPPQDWPQDAAVPSQTPFSVNFVRASSGPRQENTGWLGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDAGISEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAKQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRQDSSIGFGAPIRANMRTSGVTYAAVTSTLLESVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFDMNNVKLHFTEKALRLIAKKAMGKNTGARGLRALLEIILTEAMFEIPDVKAGNELIDAVVVDEESVGSVNSPGCGGKILCGDGALDLYLAKMEGSVVNHDVAEPDLQEGESEISSRAMSM* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1163 505 Pfam C-terminal, D2-small domain, of ClpB protein 361 430 IPR019489 -
Pvu7g1163 505 SMART AAA_5 150 308 IPR003593 -
Pvu7g1163 505 CDD AAA 151 262 - -
Pvu7g1163 505 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 76 484 - -
Pvu7g1163 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 447 IPR027417 -
Pvu7g1163 505 Gene3D - 360 460 - -
Pvu7g1163 505 Pfam AAA domain (Cdc48 subfamily) 150 354 IPR003959 GO:0005524|GO:0016887
Pvu7g1163 505 Gene3D - 87 359 IPR027417 -
Pvu7g1163 505 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 90 451 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Pvu7g1163 505 PANTHER OS01G0886600 PROTEIN 76 484 - -
Pvu7g1163 505 SMART ClpB_D2_small_2 361 454 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1163 Pvu-Chr7 15051505 15057532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1163 154 253 Miscellaneous Gene Families AT3G02450 36.634 1.73e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1163 K03544 - gmx:100818418 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1362 4 40431244 40440165 Pvu7g1163 7 15051505 15057532 PCT