Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1362 ATGTCGCGACTCTTTGGTAGATGGAAGAAGGCGCAGGAAATGGCGTCGCTTTCGGGGTTTCTGCCACGTGGGCACCAGCGAATCGGGTTAAATTTTTGCCCAATTTCGACCCAGCTGAATATGGTATCCGGCCACCGGCGGGATGCTCAGGTGGGGGTTCAGGAGCGGTATAAGTGGGACCGCGGCGGGTCGGACGACAACCCGACCCGGAAGATCCGGGCTGAGGCTAATTGCCCCCGTTGCACTAAAGACATGAATCTTGTGTTCTCTAATCGCCACTTTCCCTCCCCACAAAGTGAATCGAATTCTGAATTGGGTGGTGAGGGAGAAAGAGAAAAGGGTTACCAAGCGGTTAACCTCTGCCCAAAGTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTCTTCAAGGTACTTTTGTGGAGATTGGTAGGGTCAGTAGTACTAACAATAATGGTGTTAATAATGTAATTGGTAAGGGACATTCTCCTAGGAGGATCACACATGGAAAAGGTGGTGGTAAAGAAGGTGGTAGTAGTACTAGTAGGGCTAGTCATGGAGGAGAGGAGTCTGGGCCTAAGAGTAATACTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGGCATACAATGGTGGTGGTCGTGGTAATGGTGGTAATGGGGAGCCACCTGAGTCGTGGCCTGGTGGTAACGGGAATGAGAATGGGTTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATGAATGTTATCCGGGCTACGGGGCCTCCGAATGGCGGTTCAGGTGGTGGTGGGGGCGATGGTGAGAAGAATGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCGCCGAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGTCAAAAGAGAGCGAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAACTGTAGATTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACCGGTTCAGGGAAGACATTACTAGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTACAAACTACTTGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCCGGGATGTTTCTGGTGAGGGTGTTCAACAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAAAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCTAATATGAGAAATGGTGGAATAACAGACTCTGTAGTAACATCATCTTTACTTGAGTCAGTGGAAAGTGCTGATCTTATTGCATATGGCCTTATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACCGAAGACCAACTTATGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAGTTACACTTCACAGAGAAAGCTCTAAGACTGATAGCAAAGAAAGCAATGTCCAAAAATACTGGTGCTAGAGGTTTAAGAGCCCTACTGGAAAGCATTTTAACTGAGGCGATGTTTGAGATTCCTGATATTAAGACGGGTAGTGATCGAATTGATGCAGTTGTTGTTGATGAGGAGTCAGTAGGATCACGAACTTCCCTTGGATGTGGGGGTAAAATTCTTCGGGGAGATGGTGCTTTGGAGCAGTACCTAGATAAGATGAAAGATTCAGCGGTTAATGTTGAGGTGGGGGAATCAGATTTACATGAGGGGGATTTGGAGCTTTCATCAAGGGCCATGAGCCTGTAA 2121 0.4484 MSRLFGRWKKAQEMASLSGFLPRGHQRIGLNFCPISTQLNMVSGHRRDAQVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNLVFSNRHFPSPQSESNSELGGEGEREKGYQAVNLCPKCKTAYYFRPYDTTPLQGTFVEIGRVSSTNNNGVNNVIGKGHSPRRITHGKGGGKEGGSSTSRASHGGEESGPKSNTNASKWLEVSLWETLMAYNGGGRGNGGNGEPPESWPGGNGNENGLAVHTPPGPPFAPGMNVIRATGPPNGGSGGGGGDGEKNAWGGSNLGKDLPSPKEICKGLDKFVIGQKRAKKVLSVAVYNHYKRIYHATLQKGSTVDSEVLDDDDNVDLEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRNGGITDSVVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMSKNTGARGLRALLESILTEAMFEIPDIKTGSDRIDAVVVDEESVGSRTSLGCGGKILRGDGALEQYLDKMKDSAVNVEVGESDLHEGDLELSSRAMSL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1362 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 647 IPR027417 -
Pvu4g1362 706 MobiDBLite consensus disorder prediction 218 289 - -
Pvu4g1362 706 Pfam AAA domain (Cdc48 subfamily) 351 555 IPR003959 GO:0005524|GO:0016887
Pvu4g1362 706 SMART AAA_5 351 513 IPR003593 -
Pvu4g1362 706 MobiDBLite consensus disorder prediction 150 202 - -
Pvu4g1362 706 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 288 654 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Pvu4g1362 706 MobiDBLite consensus disorder prediction 180 202 - -
Pvu4g1362 706 Gene3D - 285 560 IPR027417 -
Pvu4g1362 706 Gene3D - 561 660 - -
Pvu4g1362 706 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 44 705 - -
Pvu4g1362 706 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 44 705 - -
Pvu4g1362 706 MobiDBLite consensus disorder prediction 90 111 - -
Pvu4g1362 706 CDD AAA 352 463 - -
Pvu4g1362 706 MobiDBLite consensus disorder prediction 90 104 - -
Pvu4g1362 706 SMART ClpB_D2_small_2 562 652 IPR019489 -
Pvu4g1362 706 Pfam C-terminal, D2-small domain, of ClpB protein 562 631 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1362 Pvu-Chr4 40431244 40440165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1362 355 454 Miscellaneous Gene Families AT3G02450 37.624 6.24e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1362 K03544 - gmx:100805340 1164.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1362 4 40431244 40440165 Pvu4g1362 4 40431244 40440165 ECH
Pvu4g1362 4 40431244 40440165 Pvu7g1163 7 15051505 15057532 PCT