Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2051 ATGGATTTTGAATACATTTTGGGTGGAATTACAGCTTCTACTATGGTGCTTCTATTTGTTCTATTCAGTTCTGCATCAAAGAAGGAGGCCAAAGATTTAGCACATGCAGAAAATAATGGAGGCACTATGATAACAACGACAACATCAGAAAATGGAAACCGACATCAAGAAATTTCACCAACCATGGACATCATCATTGTCGGTGCTGGGGTTGCTGGTGCAGCCCTTGCTTGCACACTTGGCAAGGAAGGAAGGCGAGTGCATGTTATTGAAAGGGACTTGACTGAACCAGACAGGATTGTGGGGGAATTGCTACAACCTGGAGGTTATCTCAAGCTAATTGAGTTGGATCTCCAAGATTGTGTGGGTGAGATTGATTCTCAGCAAGTCTTTGGGTATGCTCTTTACAAAGATGGGAAAAATACCAAGCTTTCTTATCCCTTGGAAAAGTTTGACTCTGATGTTTCTGGAAGAAGCTTTCACAATGGCCGATTCATACAGAGACTGCGTGAAAAGGCTTCAACTCTTCCAAATGTAAAATTAGAACAAGGGACTGTGACATCTCTGGTAGAAGAAAATGGAGTCATCAAAGGGGTAAACTACAAAAGCAGGAGTGGACAAGAGCTCACAGCTAAGGCTCCCCTCACTATAGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTCTGCAACCCAAAGGTTGATGTAGCATCTCATTTTGTTGGTCTGGTCCTAGAGAACTGCAATCTTCCATATGCCAACCATGGACACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATAAGTAGCACCGAGATTCGGTGTCTGGTTGATGTGCCTGCAGGCGAAAAATTACCTTCCCTTGGTAATGGTGACATGGCTCGTTATTTGAAAACAGTAGTTGCTCCACAGGTTCCCCCAGAGTTGCATGCTTCTTTTATAGCAGCAGTTGACAAAGGAAACATAAGATGCATGCCAAACAGAAGCATGCCTGCATCTCCATATCCCACACCTGGTGCTCTTCTCATGGGAGATGCCTTCAACATGCGTCACCCTTTAACTGGAGGAGGAATGACTGTGGCTTTGTCTGACATTGTTTTGCTAAGGAACCTTCTTAGACCCCTCCTTGATCTGCATGATGCTAATGCTCTTTGCAAATATCTTGAATCATTCTACACCCTACGCAAGCCAATGGCATCTACAATAAACACATTAGCAGGGGCATTATACAAGGTGTTTTGTGCATCCCCTGACCCAGCTAGAAAGGAAATGCGCCAAGCTTGTTTTGATTATTTAAGCCTTGGAGGTGTTTTCTCAGATGGACCAATATCTCTACTCTCAGGCCTAAATCCTCGTCCATTAAGCTTGGTTCTCCACTTCTTTGCTGTGGCTATATACGGTGTTGCTCGCTTACTCCTACCATTTCCTTCTCTAAAACGCATGTGGATTGGAGCTAGATTGATTTCCGGTGCCTCTGCTATCATTTTCCCCATTATCAGGGCTGAAGGAATTAGACAAATGTTCTTCCCGGTGACTGTGCCAGCATATTACAGAACACCTCCTACCAATTTGCATGATTAA 1593 0.4369 MDFEYILGGITASTMVLLFVLFSSASKKEAKDLAHAENNGGTMITTTTSENGNRHQEISPTMDIIIVGAGVAGAALACTLGKEGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELDLQDCVGEIDSQQVFGYALYKDGKNTKLSYPLEKFDSDVSGRSFHNGRFIQRLREKASTLPNVKLEQGTVTSLVEENGVIKGVNYKSRSGQELTAKAPLTIVCDGCFSNLRRSLCNPKVDVASHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPAGEKLPSLGNGDMARYLKTVVAPQVPPELHASFIAAVDKGNIRCMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLLDLHDANALCKYLESFYTLRKPMASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPISLLSGLNPRPLSLVLHFFAVAIYGVARLLLPFPSLKRMWIGARLISGASAIIFPIIRAEGIRQMFFPVTVPAYYRTPPTNLHD* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2051 530 Pfam NAD(P)-binding Rossmann-like domain 66 92 - -
Pvu6g2051 530 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 530 - -
Pvu6g2051 530 Gene3D - 49 417 IPR036188 -
Pvu6g2051 530 PANTHER SQUALENE MONOOXYGENASE 1 530 IPR040125 GO:0004506|GO:0016126
Pvu6g2051 530 Pfam Squalene epoxidase 212 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Pvu6g2051 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 63 85 - -
Pvu6g2051 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 212 227 - -
Pvu6g2051 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 341 356 - -
Pvu6g2051 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 356 372 - -
Pvu6g2051 530 SUPERFAMILY FAD/NAD(P)-binding domain 62 438 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2051 Pvu-Chr6 30321550 30325241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2051 44 526 Miscellaneous Gene Families AT1G58440 76.190 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2051 K00511 - gmx:100795027 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2051 6 30321550 30325241 Pvu6g2051 6 30321550 30325241 ECH
Pvu2g2231 2 37955197 37958420 Pvu6g2051 6 30321550 30325241 PCT