Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2231 ATGGATTATCAGTATATTCTAGGAGGGATCATGGTTTCTAGTTTCGCATTTTTGTATTTTGTGTACATTTTTGGAGCAAAAAAGGTCACAGATTCAAGTTTAGTTCATGTAAAAAGTAACGAGTGTGAGAAGAAATCATCAGAAAATGGAATATGCTCACACGAGGCTGCAGAAAGTGCTGAAATCATCATTGTGGGTGCAGGCGTTGCTGGTGCTGCTCTTGCTTACACGCTTGGAAAGGATGGACGCCGAGTACATGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATCGTGGGTGAATTGCTACAACCTGGGGGATATTTGAAGTTAATTGAGCTGGGTCTTCAGGATTGTGTAAGTGAAATTGATGCTCAGCAAGTCTTTGGGTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTCCCTTATCCCTTGGAAAAATTTAGCTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGAGAGAAAAGGCCTCATCTCTTCCTAATGTCAATTTAGAACAAGGAACTGTCACATCTCTACTTGAAGAAAAAGGAACCATCACCGGGGTGCAGTACAAAACCAAAAGTGGACAAGAGTTCACAGCAAAGGCTCCCCTCACCATAGTATGTGATGGATGTTTTTCCAACTTGAGGCGTTCTCTTTGCAATCCTAAGGTTGAAGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAGTTGTGATCTTCCATATGCAAATCATGGACACGTGATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCTATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCAGGCCAAAAATTACCTTCCCTAGGCAATGGTGAAATGGCTAGTTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTAAAGAGCTGTATAGTTCTTTTATAGCAGCTGTTGAGAAAGGAAGCATAAGAACCATGCCAAATAGAAGCATGCCAGCCTCACCTCAACCCACACCTGGGGCCCTTCTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACAGGAGGAGGAATGACTGTGGCTTTATCTGACATTGTTGTGCTAAGGGATCTACTTAAACCCCTTCGGAATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCTACACCCTACGCAAGCCAGTAGCATCCACAATAAACACACTAGCTGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGGCAAGCATGTTTTGATTACTTGAGCCTTGGAGGTGTTTTCTCTAATGGACCAATATCTCTACTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTCGCGGTCGCTATATATGGTGTTGGCCGCTTGATCATACCATTTCCTTCTCCAAAACGGATGTGGATTGGAGCTAGATTGATTTCAAGTGCATCAGGCATAATATTCCCGATTATTAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACTGTGGCAGCATATTACAGAGCTCCTCCTGTTCCTTGA 1575 0.4317 MDYQYILGGIMVSSFAFLYFVYIFGAKKVTDSSLVHVKSNECEKKSSENGICSHEAAESAEIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVSEIDAQQVFGYALYKDGKNTKLPYPLEKFSSDVSGRSFHNGRFIQRMREKASSLPNVNLEQGTVTSLLEEKGTITGVQYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLESCDLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMASYLKTVVAPQVPKELYSSFIAAVEKGSIRTMPNRSMPASPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLIIPFPSPKRMWIGARLISSASGIIFPIIKAEGVRQMFFPATVAAYYRAPPVP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2231 524 PANTHER SQUALENE MONOOXYGENASE 1 523 IPR040125 GO:0004506|GO:0016126
Pvu2g2231 524 SUPERFAMILY FAD/NAD(P)-binding domain 61 435 IPR036188 -
Pvu2g2231 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Pvu2g2231 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Pvu2g2231 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Pvu2g2231 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Pvu2g2231 524 Gene3D - 48 414 IPR036188 -
Pvu2g2231 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Pvu2g2231 524 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Pvu2g2231 524 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2231 Pvu-Chr2 37955197 37958420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2231 60 523 Miscellaneous Gene Families AT1G58440 80.645 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2231 K00511 - gmx:100800329 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2231 2 37955197 37958420 Pvu2g2231 2 37955197 37958420 ECH
Pvu2g2231 2 37955197 37958420 Pvu6g2051 6 30321550 30325241 PCT