Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1958 ATGCAGCGTTTACCAGCCAAGTTGATGGCGAAAATGGGTCGCCCGGCATGCGACGTGTTCATCAACCACCGTGGAATCGACACGAAGAGGAACGTTGCGGGGTTGCTGTACGATAATCTTACGAGGATGGGAGTGAGGTCGTTTTTGGACAGCATGAACATGAAACCCGGGGACAGGCTCTTCCACAACATTGATAGAGGCATTCTAGGTTGCAAGGTTGGTGTTGCCGTCTTTTCTCCTCGCTACTGTGACTCCCATTTCTGCCTCCACGAGCTCGCTCTTCTGATGGAGTCCAACAAAAGGGTCGTTCCCATTTTCTACGACGTGAAACCCTCGGAACTGAGGGTGAAGGACAACGGAACGTGCCCTCCGATGGAGCTTCAGAGGTTCGCCTTCGCACTTGAAGAAGCAAAGAACACCGTGGGATTGACGTTTGATTCTTTGAACGGGGATTGGTCAAAGTTGCTAAGGAATGCTTCGGAAGCGGTGATCGTGAACTTGTTGGAGGTAGAGGAAGAAAGGAAGCACGCGAGGAAGCAACGTTGA 546 0.5165 MQRLPAKLMAKMGRPACDVFINHRGIDTKRNVAGLLYDNLTRMGVRSFLDSMNMKPGDRLFHNIDRGILGCKVGVAVFSPRYCDSHFCLHELALLMESNKRVVPIFYDVKPSELRVKDNGTCPPMELQRFAFALEEAKNTVGLTFDSLNGDWSKLLRNASEAVIVNLLEVEEERKHARKQR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1958 181 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 11 179 - -
Pvu6g1958 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 11 179 - -
Pvu6g1958 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
Pvu6g1958 181 Gene3D - 13 171 IPR035897 -
Pvu6g1958 181 SMART till_3 16 162 IPR000157 GO:0007165
Pvu6g1958 181 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
Pvu6g1958 181 Pfam TIR domain 18 115 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1958 Pvu-Chr6 29693296 29693943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1958 9 146 Miscellaneous Gene Families AT1G57670 31.613 1.10e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1958 - - vun:114189231 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1958 6 29693296 29693943 Pvu6g1958 6 29693296 29693943 ECH
Pvu2g2321 2 39038069 39039040 Pvu6g1958 6 29693296 29693943 PCT