Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1772 ATGGACCGGCCAAATTCGATCGATCAAGACGGCGACGTTTTCGTAGACGCGTGTCAACACTTCCCCGCCGAGGGCTCGCCGGAGCATTCCGATTCGGCTTCCAGGTTTTCGGATCCACCACCCAAACCTCAGTCATACTATCCGGCTGCCACAATCCGGCGCCGGCCAGTTCGTCGCGGTTGTGTGGGTACTCAATCGTCTGGTTCAAGCTTCGAGAGCGATTTGATCAATGACGACTCGAGAAGGAGTTTCCGACACCGCACGAGGCATAGAAATATCAAGAAAGACGTGAATTCGGAGAAACCCGATTCGAATGAACCGCAACAAGTTAATGCCTCGACGGAAGAGAACAACGAGGGCTCCACCGTAACTTCAGCTGTGAACGATGATGGAGCTGTCGACTCCGTTGACTCGGCGCCGCGACTCGGTGACTCTTCTTCGAGTTTCCTCGACCTCCCCGCGGGGTTAGCGATTAACTTATTAAGGTTTCAGATGAAGTTAATGTTCATGTTCATAACTTACCCCCTGTTGTTCACGTTTTATTCATGCGTGTTTTTCATGGATCCTTTGGGGACAACGAAGAGGGGCAAGATTTTCCTTATAGGAATTTTGAACAGAGGGTGGTGTTTTTTGTTTCGGTGCATTAGGCCTTATATTAGTAGATGTTTCAAGGAGAACGAATCGGTTTGGAGCGTGGCTTTTCGGTGGGGGTGGGGGTTCTTGTGCTCAATCTACGTTTGTTGCGTCATGTTTGGTCTTCTGGTTTCGTCGTTTGTGTTTAGTGGGTTCTTTATGAAGCATTTGGTGGAGAAGCCGATTCAGATGAGGGAGGTTTTGAACTTTGATTATAGCAAGCATAGTCCTGTCGCGTATGTGCCGATAATGTCGTGTGCTGGTGTTATTGGTGGTATAGGTTCCGAGGATAAGGTTCATGATCGGAAGTGGGTGGGTGAACGGTTTATACCTTCTAAGCACAAGGTGCAAGCCACTGTTGAGTTAAGTGTGCCAGAGTCAGGATACAACAGAAACCTTGGGATGTTTCAGATCAGGGTAGATTTCCTATTGTCTAATGGTAAAGCTATTGCAAGCTCAAGTCAACCTTGCATGTTAAGATTCAGAAGTGAGCCTATCCGCCTAATCACGACTCTCCTCAAGATTGCTCCTCTTGTTACTGGCTATACATCCGAAACTCAGACTCTGAATGTGAAGATGAGAGGTTTCGTAGAAGGAGATCTACCTACTTCGTGCTTGAAAGTGACCCTTGAGCAACGAGCAGAATATCAACCAGGTGCAGGGATTCCTGAAATATATGACGCATCTCTGATTGTTGAATCCGAACTTCCCTTGTTCAAGAGGATTATTTGGCTTTGGAAGATGAGCATATTTATATGGATCGCGATGATGGCATTCTTCACAGAGCTACTTTTTGCTCTTGTGTGTTGTATGCCTATTATTATTCCGAAAACAAGGCAAAGGGTGGCTTCTGCTCGCACATTAAACCGTCCTCAGGCACTAGATTGA 1521 0.4701 MDRPNSIDQDGDVFVDACQHFPAEGSPEHSDSASRFSDPPPKPQSYYPAATIRRRPVRRGCVGTQSSGSSFESDLINDDSRRSFRHRTRHRNIKKDVNSEKPDSNEPQQVNASTEENNEGSTVTSAVNDDGAVDSVDSAPRLGDSSSSFLDLPAGLAINLLRFQMKLMFMFITYPLLFTFYSCVFFMDPLGTTKRGKIFLIGILNRGWCFLFRCIRPYISRCFKENESVWSVAFRWGWGFLCSIYVCCVMFGLLVSSFVFSGFFMKHLVEKPIQMREVLNFDYSKHSPVAYVPIMSCAGVIGGIGSEDKVHDRKWVGERFIPSKHKVQATVELSVPESGYNRNLGMFQIRVDFLLSNGKAIASSSQPCMLRFRSEPIRLITTLLKIAPLVTGYTSETQTLNVKMRGFVEGDLPTSCLKVTLEQRAEYQPGAGIPEIYDASLIVESELPLFKRIIWLWKMSIFIWIAMMAFFTELLFALVCCMPIIIPKTRQRVASARTLNRPQALD* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1772 506 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 8 498 IPR009617 GO:0019915
Pvu6g1772 506 MobiDBLite consensus disorder prediction 103 131 - -
Pvu6g1772 506 Pfam Putative adipose-regulatory protein (Seipin) 253 469 IPR009617 GO:0019915
Pvu6g1772 506 MobiDBLite consensus disorder prediction 1 133 - -
Pvu6g1772 506 PANTHER PROTEIN (SEIPIN), PUTATIVE-RELATED 8 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1772 Pvu-Chr6 28169981 28172724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1772 K19365 - gmx:100796452 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1772 6 28169981 28172724 Pvu6g1772 6 28169981 28172724 ECH
Pvu6g1772 6 28169981 28172724 Pvu2g2494 2 40915942 40918682 ECH
Pvu2g2494 2 40915942 40918682 Pvu6g1772 6 28169981 28172724 PCT