Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1505 ATGAAGACCGGGTCGCGTTCCAAAGAGTATCAGGAATGGTTCAATTTGGCTGATTCAGACGGTGATGGACGAATCTCTGGGAACGAGGCTACTAAGTTCTTCGCTCTCTCCAACTTGTCGCGCTCGCAACTCAAACAGCTTTGGACTCTCGCCGACGTCAAACGACAGGGGTTTTTGGGTTTCCCGGAGTTCGTTACTGCAATGCAGTTGGTTTCGCTGGCGCAAGCAGGGCAAGAACTTAACTCAGACATCCTCAAAACTCAAGTTGATAAGGAAAATATTAAACCTCCTGTACTAGAAGGACTCGATGCTTTATTAGCACAAAAGAATTTAACAATTACTACCCTGTCCGATGTAAACGGGATTGCTCAGCCTCAAGTGTTGCCAACTAATTGGTGGTTTGGTTCAAAATCTTCAAAGAAATTACCTCTCAATTCAGTTACATCAATCATTGATGGCTTGAAGAGATTATATATCGAGAGACTAAAGCCGTTGGAAGTTGCTTACCGATATAATGATTTTGTATCTCCATTGTTGACCAACACTGATTTTGATGCCAAACCCATGGTTATGCTTCTCGGTCAATATTCCACAGGAAAAACTACATTTATAAAACATTTGTTAAGATGTGATTATCCGGGAGCACATGTTGGACCAGAGCCTACCACTGATAGATTTGTTGTTGTAATGTCTGGATCTGATGAGAGGAGTATTCCTGGAAATACCATTGCTGTTGATGCTGACATGCCTTTCAGCGGCTTGACAACATTTGGAGGTTCTTTTTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTAGATGAAATAACACTTGTGGACACTCCTGGAGTCCTATCTGGAGAGAAACAGAGGACTCAACGAAGCTATGATTTCACTGGTGTTGTGTCTTGGTTTGCTGCAAAATGTGATCTCATTCTTCTCCTGTTTGATCCTCATAAACTAGACATCAGTGATGAGTTTAAACGCGTGATCACGTCTTTACGTGGTAATGATGACAAGATACGAGTGGTTTTGAATAAGGCAGATCAAGTTGACACTCAACAACTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGGAAAGTTCTAAATACTCCCGAAGTTTCACGTGTATACATTGGCTCATTTAATGATAAGCCTATAGATGAAGGCTTCGTTAGTCCACTAGGACAGGATCTGTTTGAGAAGGAACAAAATAATCTGCTGGCAGATTTGATAGATATTCCAAAGAAGGCATGTGATCGCCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATCCATGCGTATATAATTAGCCACCTTAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAGAGACTTACTGACAATCTTGAGGAAGAATTTGCAAAGGTTCAAAGAGAGTTTCATCTACCTGCTGGTGATTTTCCCAATGTTGAACACTTCAGAGAAGTATTGAATAGTTATAGCATCGACAAATTTGAAAAATTAAAGCCCAAAATGATTCAAGCCGTGGATGACATGCTTGGATATGAAATACCAGAGCTTTTAAAGAAATTCAGAAATCCTTATGATTAA 1608 0.4061 MKTGSRSKEYQEWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQLWTLADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQVDKENIKPPVLEGLDALLAQKNLTITTLSDVNGIAQPQVLPTNWWFGSKSSKKLPLNSVTSIIDGLKRLYIERLKPLEVAYRYNDFVSPLLTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGSDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPIDEGFVSPLGQDLFEKEQNNLLADLIDIPKKACDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQRLTDNLEEEFAKVQREFHLPAGDFPNVEHFREVLNSYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1505 535 SMART eh_3 1 90 IPR000261 GO:0005515
Pvu6g1505 535 Pfam Domain of unknown function (DUF5600) 425 526 IPR040990 -
Pvu6g1505 535 Coils Coil 458 478 - -
Pvu6g1505 535 Pfam N-terminal EH-domain containing protein 153 185 IPR031692 -
Pvu6g1505 535 Gene3D - 190 418 IPR027417 -
Pvu6g1505 535 PANTHER EH DOMAIN 13 533 - -
Pvu6g1505 535 PANTHER CALCIUM-BINDING EF HAND PROTEIN 13 533 - -
Pvu6g1505 535 SUPERFAMILY EF-hand 7 77 IPR011992 -
Pvu6g1505 535 CDD EHD 189 433 - -
Pvu6g1505 535 Gene3D - 154 526 - -
Pvu6g1505 535 SMART efh_1 43 71 IPR002048 GO:0005509
Pvu6g1505 535 SMART efh_1 9 37 IPR002048 GO:0005509
Pvu6g1505 535 Pfam Dynamin family 190 349 IPR045063 -
Pvu6g1505 535 CDD EH 10 76 IPR000261 GO:0005515
Pvu6g1505 535 ProSiteProfiles EH domain profile. 6 84 IPR000261 GO:0005515
Pvu6g1505 535 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 184 419 IPR030381 GO:0005525
Pvu6g1505 535 Pfam Cytoskeletal-regulatory complex EF hand 8 71 IPR000261 GO:0005515
Pvu6g1505 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 457 IPR027417 -
Pvu6g1505 535 Gene3D - 2 99 - -
Pvu6g1505 535 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1505 Pvu-Chr6 25816184 25820143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1505 8 535 EF-hand Containing Proteins AT4G05520 78.030 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1505 K12483 - gmx:100809091 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1505 6 25816184 25820143 Pvu6g1505 6 25816184 25820143 ECH
Pvu3g0859 3 13327609 13332317 Pvu6g1505 6 25816184 25820143 PCT