Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0859 ATGAAAACAGTCTCCGATTGGATCCATTCGTGTTCCAAAGAGCAATCGACGACGTACAAAGAATGGTTCAACTCAGCCGATTCAGACGGAGATGGCCGTATCTCTGGAAATGATGCAACCACGTTCTTTTCTCTCTCCAACTTGTCTCGCTCTCAACTCAAGCAGGTTTGGGCCATCGCTGATGCTAAAAGACAAGGATTTCTAGGTTTTCAAGAGTTTGTTATCGCAATGCAGCTCGTTGCGCTGGCACAAGCAGGATACGATATCAACTCAGATATCTTTAACGCGGAAATTGACAAGGAAAATATTAAATCTCCAGTAATGGAAGGGCTTGATGCTTTAATAGCTAAAACAAAGAGTTTGCATTCCCAACCTGACGCATCTGGGACTGCTCAACCTCAGCTTTTGTCCCTCAATTCATGGGCTGCTCCAAAATCTGCGAAGAAATTATCTCTCAGTGCAGTTACATCAATAATTGATGGCTTGAAGAGATTGTACATGGAAAAGCTAAAGCCGTTGGAGGTCACTTATCAATTCAATGATTTTGTATCTCCGTTATTGACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCCACAGGGAAAACAACCTTCATAAAACATTTGCTAAGATGCGATTATCCAGGTGCACACATCGGACCAGAGCCTACAACTGACAGATTTGTGGTTGTCATGTCTGGTCCTGATGAAAGGAGTATTCCTGGAAACACAATAGCTGTTGATGCTGATATGCCTTTTAGTGGCCTGACAACTTTTGGTGGCTCATTTTTGTCGAAGTTCCAATGTTCTCAACTGCCACATCCACTGCTAGATGAAATAACCTTTGTGGACACTCCTGGTGTCCTCTCTGGAGAAAAACAAAGGACTCAACGAAGTTATGACTTCACCGGTGTTATATCTTGGTTTGCTGCAAAATGTGATCTGATACTTCTCCTATTTGACCCTCATAAACTTGACATTAGTGATGAATTTAAACGTGTAATTGGAGCTCTACATGGTCATGATGACAAGATACGTGTGGTTTTGAATAAAGCGGACCAAATTGATACTCAACAACTCATGAGAGTTTATGGAGCATTGATGTGGTCTCTGGGGAAAGTTCTTAATACTCCAGAAGTTATGCGTGTATATATTGGCTCATTTAATGATAAGCCTATAAACGAAGGCTTTGTTGGCCCATTTGGACAGGAGCTCTTTGAAAAGGAACAGAATGATCTCCTTGCAGATTTGGTAGATATTCCAAGAAAGGCATGCGACAGTCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGTATATAATTAGTCATCTTAGGAATGAGATGCCTGCAATGATGGGCAAAGCTAAGGCTCAACAAAGGCTTATAGAGAATCTTGAAGACGAATTTAGAAAGGTTCAAAGGGAGTTTCATCTACCAGCTGGTGATTTTCCTAATGTAGAACACTTCAGAGAGGTTTTGAGTGGCTATAGCATTGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCTGTTGATGACATGCTTGGATACGAAATACCAGAGTTATTAAAAAAATTTAGAAATCCTTATGATTGA 1632 0.4044 MKTVSDWIHSCSKEQSTTYKEWFNSADSDGDGRISGNDATTFFSLSNLSRSQLKQVWAIADAKRQGFLGFQEFVIAMQLVALAQAGYDINSDIFNAEIDKENIKSPVMEGLDALIAKTKSLHSQPDASGTAQPQLLSLNSWAAPKSAKKLSLSAVTSIIDGLKRLYMEKLKPLEVTYQFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQLPHPLLDEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIGALHGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPINEGFVGPFGQELFEKEQNDLLADLVDIPRKACDSRINEFVKRARSAKIHAYIISHLRNEMPAMMGKAKAQQRLIENLEDEFRKVQREFHLPAGDFPNVEHFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0859 543 Gene3D - 10 105 - -
Pvu3g0859 543 Gene3D - 162 534 - -
Pvu3g0859 543 ProSiteProfiles EF-hand calcium-binding domain profile. 51 83 IPR002048 GO:0005509
Pvu3g0859 543 Pfam Dynamin family 198 357 IPR045063 -
Pvu3g0859 543 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Pvu3g0859 543 SMART efh_1 52 80 IPR002048 GO:0005509
Pvu3g0859 543 SMART efh_1 18 46 IPR002048 GO:0005509
Pvu3g0859 543 Pfam Domain of unknown function (DUF5600) 434 534 IPR040990 -
Pvu3g0859 543 SUPERFAMILY EF-hand 6 89 IPR011992 -
Pvu3g0859 543 PANTHER CALCIUM-BINDING EF HAND PROTEIN 20 541 - -
Pvu3g0859 543 CDD EHD 197 441 - -
Pvu3g0859 543 PANTHER EH DOMAIN 20 541 - -
Pvu3g0859 543 CDD EH 19 85 IPR000261 GO:0005515
Pvu3g0859 543 Coils Coil 466 486 - -
Pvu3g0859 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 428 IPR030381 GO:0005525
Pvu3g0859 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Pvu3g0859 543 Pfam Cytoskeletal-regulatory complex EF hand 17 80 IPR000261 GO:0005515
Pvu3g0859 543 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Pvu3g0859 543 Gene3D - 198 426 IPR027417 -
Pvu3g0859 543 SMART eh_3 8 103 IPR000261 GO:0005515
Pvu3g0859 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0859 Pvu-Chr3 13327609 13332317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0859 8 543 EF-hand Containing Proteins AT4G05520 76.536 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0859 K12483 - gmx:100803757 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0859 3 13327609 13332317 Pvu6g1505 6 25816184 25820143 PCT