Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1452 ATGCTCAGATTACTTCCCAAGCTCTCACTCCTCTTTTCCTCAAATAGGAATCCTCGCTATCTTACAACTTCTCTGCGTTTCATATCTCAAGGGAGAAGACCAACTTCAAGAGTCTCCTATCCAATTTTATCCGCAATTTCATCAGCAATTGCATCAGAAACTTCCGCAGAAGATCAAGCTCAACAGATTAAGCTATTAACATCAACTGATGATTATTATGGTGGTGTTACTGTGGAACTGGACCATCCTATGGACTCTTCAGCATTTATCCCAGTCCTTAGGGCTTCGGTTTCTCACTGGAAGCAGCTGGGCAAGAAGGGTGTTTGGATAAAATTACCTATTCATTTAGCCAGTCTAGTTGAAGCTTTAGTTAAGGAGGGGTTTTGGTATCATCATGCTGAACCAAATTATTTAATGCTTGTATATTGGATTCCTGACAGTCCAAGTACTATTCCTGCAAATGCCACACACAGGGTGGGGGTTGGTTCATTACTCATGAATGAAAAACAAGAGGTCCTAGTTGTTCAAGAGAATAGTGGACTATTTCAAGGAACTGGAATTTGGAAATTGCCAACTGGAGTTGTTGATCAGGGAGAAGATATTTGTGTAGCAGCAGTAAGAGAGGTCAAAGAAGAAACAGGGATTGATTCAGAATTTGTGGAAGTATTAGCATTCAGACAAAGTCATAATTCATTCTTTGAGAAGTCAGACTTATTCTTCGTGTGCATGTTGCGGCCTCTTTCTTTTAACATCCAAACACAGAGATTTGAGATACTGGATGCACAGTGGATGCCATTTGAGGAATATGCAGCCCAGCCATTCGTCCAAAAGAGTGAGCTTCTGAAGTACATAAATGATACATGTTTGGCAAAGATGGGTGGACAATATTCTGGATTTTGTCCTGTATCTACGTCATCGAACTTTTCTGATCAAAAGAATTATTTGTACTTGAATGCTGGGACCTTAAAGAACTCCTATTCTTCCTGA 987 0.4012 MLRLLPKLSLLFSSNRNPRYLTTSLRFISQGRRPTSRVSYPILSAISSAIASETSAEDQAQQIKLLTSTDDYYGGVTVELDHPMDSSAFIPVLRASVSHWKQLGKKGVWIKLPIHLASLVEALVKEGFWYHHAEPNYLMLVYWIPDSPSTIPANATHRVGVGSLLMNEKQEVLVVQENSGLFQGTGIWKLPTGVVDQGEDICVAAVREVKEETGIDSEFVEVLAFRQSHNSFFEKSDLFFVCMLRPLSFNIQTQRFEILDAQWMPFEEYAAQPFVQKSELLKYINDTCLAKMGGQYSGFCPVSTSSNFSDQKNYLYLNAGTLKNSYSS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1452 328 CDD Nudix_Hydrolase_12 157 288 - -
Pvu6g1452 328 Pfam NUDIX domain 157 276 IPR000086 -
Pvu6g1452 328 PANTHER NUDIX HYDROLASE 2 35 324 - -
Pvu6g1452 328 ProSiteProfiles Nudix hydrolase domain profile. 156 288 IPR000086 -
Pvu6g1452 328 SUPERFAMILY Nudix 124 277 IPR015797 -
Pvu6g1452 328 ProSitePatterns Nudix box signature. 193 214 IPR020084 GO:0016787
Pvu6g1452 328 Gene3D - 63 149 - -
Pvu6g1452 328 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 116 134 IPR003293 -
Pvu6g1452 328 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 138 154 IPR003293 -
Pvu6g1452 328 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 154 172 IPR003293 -
Pvu6g1452 328 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 242 266 IPR003293 -
Pvu6g1452 328 PANTHER NUDIX HYDROLASE RELATED 35 324 IPR003293 -
Pvu6g1452 328 Pfam Nudix hydrolase domain 66 144 IPR040618 -
Pvu6g1452 328 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 158 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1452 Pvu-Chr6 25447399 25452012 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1452 - - gmx:100778567 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1452 6 25447399 25452012 Pvu6g1452 6 25447399 25452012 ECH
Pvu3g0902 3 14989541 14994137 Pvu6g1452 6 25447399 25452012 PCT