Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1425 ATGAGCCTTGTTGTTTCTGAGGATGCCCTCAACAAGCTTCAAGCTCTCATGGATCAAGTTGAGGAGGAGTCACTGCTCAGAACTTTTCAGAATGTTCATCAAGGATGTGTCACCGAAACCCTAATGAGATTTCTAAAAGCAAGGGAGTGGAATGTTACCAAGGCACATAAAATGATAATCGATTGTTTAAATTGGAGAGTGCAAAATGAGATTGACAACATATTATCGAAACCTATAATTCCTACTGATTTCTACCGAGGCATTCGTGATTCACAACTTATAGGTTTGTCTGGGTACTCAAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCTCATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCATATTCAAATTAACGAATATCGTGATCGTGTAATATTGCCTTCTGCTTCAAAGAAGCATGGGCAGCCTATTACCACATGTGTAAAAGTTTTGGATATGACTGGTCTGAAGTTGTCAGCCCTGAATCAGATCAAGTTGTTAACAATAATATCATCCATTGATGATCTGAACTACCCTGAGAAAACAAATACTTATTACATTGTAAATGTGCCATACATATTTTCAGCATGTTGGAAGGTTGTGAAGCCACTTCTACAAGAGAGGACAAGAAGAAAAGTGCAAGTCTTGCCAGGTTGTGGGCGAGATGAACTGTTGAAGATCATGGATTATGCATCACTGCCACATTTCTGTAGAAGAGAAGGCTCTGGATCATCCAGGCATTCAGAGAATGGAAATGGAAATGGAAATGAAAATTGCTATTCCTTGGATCATCCTTTCCATCAGAAGCTCTACAATCACATAAAGGAGGAATCCAGAATCCAAGAACCTGTTGAACCAATCAAGCAGGGATCATTCCATGTAGATTTTCCAGAACCCCCTGCTGAGAAAGCTGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCAGCAATGGAACTTGTGATTGA 999 0.3994 MSLVVSEDALNKLQALMDQVEEESLLRTFQNVHQGCVTETLMRFLKAREWNVTKAHKMIIDCLNWRVQNEIDNILSKPIIPTDFYRGIRDSQLIGLSGYSREGLPVFAIGVGLSSFDKASVHYYVQSHIQINEYRDRVILPSASKKHGQPITTCVKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKIMDYASLPHFCRREGSGSSRHSENGNGNGNENCYSLDHPFHQKLYNHIKEESRIQEPVEPIKQGSFHVDFPEPPAEKAEIVKTLESELHKFKISNGTCD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1425 332 Pfam CRAL/TRIO, N-terminal domain 9 61 IPR011074 -
Pvu6g1425 332 SUPERFAMILY CRAL/TRIO domain 83 244 IPR036865 -
Pvu6g1425 332 Coils Coil 3 23 - -
Pvu6g1425 332 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 241 IPR001251 -
Pvu6g1425 332 SUPERFAMILY CRAL/TRIO N-terminal domain 10 78 IPR036273 -
Pvu6g1425 332 CDD SEC14 85 243 IPR001251 -
Pvu6g1425 332 PANTHER - 7 330 - -
Pvu6g1425 332 SMART sec14_4 88 249 IPR001251 -
Pvu6g1425 332 Pfam CRAL/TRIO domain 92 243 IPR001251 -
Pvu6g1425 332 Gene3D - 4 292 IPR036865 -
Pvu6g1425 332 SMART CRAL_TRIO_N_2 37 62 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1425 Pvu-Chr6 25118714 25122866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1425 4 329 Acyl Lipid Metabolism Gene Families AT5G47730 72.393 9.50e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1425 - - gmx:100793867 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1425 6 25118714 25122866 Pvu6g1425 6 25118714 25122866 ECH
Pvu3g0912 3 15567459 15571772 Pvu6g1425 6 25118714 25122866 PCT