Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1229 ATGGCTTCTCTTGCTCTTCAGTTCACCGCTCTCAAGTGCTCTCCACTCTCTTCTTCTCCCCTCTCCCAACCATCCCTTTTCACCCAACATCGCCACAACCACAGGCGCTCTTCAACTCCCATTGTTAACTCAGTAGCACTATCCAACGCACAGAACAAAGAGAGAACCAAGCTCAAGAAGCTCTTCGAAGAAGCCTACGAGAGATGCCGCACTGCTCCCATGGAAGGTGTCTCCTTCACCCTTGAAGACTTCACTGCCGCTCTCGAGAAGTATGACTTTGATTCTGAAGTTGGATCCAAGGTTAAAGGTACTGTGTTCTACACGGATAACAATGGAGCAGTTGTTGACATCACTGCAAAGTCCTCGGCGTATTTGCCACTACAGGAAGCGAGCATCCGCAGGATTAAGCACGTGCAAGAAGCGGGCATTGTGGCTGGGTTGAGAGAGGAGTTTTTGATCATTGGTGAGAATCAAGCGGATGATAGCTTGATCTTGAGTTTAAGGTCGATTCAGTATGATCTTGCATGGGAACGTTGTAGGCAACTTCAGGCAGAAGATGCTTCTGTGAAGGGTAAGATTGTGGGGGTGAACAAAGGTGGAGTGGTGGCTGAATTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCACAATTGTCAACGAACTCAAATGTAGAAGAGCTTCTTGAAAGGGAGCTTCCCCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTTCTCAGTAATCGCAAGGCCATTGCTGGCAACCAGGCACAGCTAGGAATTGGTTCAGTGGTTACTGGTTCTGTTCAAAGTCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACCGATATCTCAACTGTTCTTCAACCTGGTGACATATTAAAGGTGATGATCTTAAGTCATGACCGTGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATCCGCAATCCAAAGCTTGTTTTTGAGAAGGCCGAGGACATGGCTCAAACGTTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTCTCACCGGTGATGGGATCCTGGGACAATTTACTTCAGACTTGCCCGAAGAGGGACTAGATCTGAGTGAGGTGCCACCAGCTGAAGAATCATGA 1242 0.4783 MASLALQFTALKCSPLSSSPLSQPSLFTQHRHNHRRSSTPIVNSVALSNAQNKERTKLKKLFEEAYERCRTAPMEGVSFTLEDFTAALEKYDFDSEVGSKVKGTVFYTDNNGAVVDITAKSSAYLPLQEASIRRIKHVQEAGIVAGLREEFLIIGENQADDSLILSLRSIQYDLAWERCRQLQAEDASVKGKIVGVNKGGVVAELEGLRGFVPLSQLSTNSNVEELLERELPLKFVEVDEEQSRLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEDMAQTFRQRIAQAEAMARADMLRFQPESGLTLTGDGILGQFTSDLPEEGLDLSEVPPAEES* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1229 413 CDD S1_RPS1_repeat_hs4 263 331 - -
Pvu3g1229 413 ProSiteProfiles S1 domain profile. 263 331 IPR003029 GO:0003676
Pvu3g1229 413 Gene3D - 179 257 IPR012340 -
Pvu3g1229 413 ProSiteProfiles S1 domain profile. 98 168 IPR003029 GO:0003676
Pvu3g1229 413 SUPERFAMILY Nucleic acid-binding proteins 262 341 IPR012340 -
Pvu3g1229 413 SMART S1_6 184 250 IPR022967 -
Pvu3g1229 413 SMART S1_6 96 168 IPR022967 -
Pvu3g1229 413 SMART S1_6 261 331 IPR022967 -
Pvu3g1229 413 SUPERFAMILY Nucleic acid-binding proteins 187 255 IPR012340 -
Pvu3g1229 413 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 413 - -
Pvu3g1229 413 Gene3D - 81 178 IPR012340 -
Pvu3g1229 413 PRINTS Ribosomal protein S1 signature 98 116 IPR035104 -
Pvu3g1229 413 PRINTS Ribosomal protein S1 signature 116 130 IPR035104 -
Pvu3g1229 413 PRINTS Ribosomal protein S1 signature 189 205 IPR035104 -
Pvu3g1229 413 PRINTS Ribosomal protein S1 signature 234 254 IPR035104 -
Pvu3g1229 413 MobiDBLite consensus disorder prediction 387 413 - -
Pvu3g1229 413 Pfam S1 RNA binding domain 184 248 IPR003029 GO:0003676
Pvu3g1229 413 Pfam S1 RNA binding domain 262 331 IPR003029 GO:0003676
Pvu3g1229 413 Gene3D - 258 335 IPR012340 -
Pvu3g1229 413 PANTHER 30S RIBOSOMAL PROTEIN S1 1 413 - -
Pvu3g1229 413 ProSiteProfiles S1 domain profile. 186 250 IPR003029 GO:0003676
Pvu3g1229 413 Coils Coil 348 368 - -
Pvu3g1229 413 SUPERFAMILY Nucleic acid-binding proteins 93 193 IPR012340 -
Pvu3g1229 413 CDD S1_RPS1_repeat_ec2_hs2 186 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1229 Pvu-Chr3 29592663 29596218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1229 K02945 - gmx:100812847 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1229 3 29592663 29596218 Pvu3g1229 3 29592663 29596218 ECH
Pvu3g1229 3 29592663 29596218 Pvu6g1267 6 23683623 23687986 PCT