Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1265 ATGTTTTTCAGCGGCGATTCCTCTACTCGTAAGCGTGTTGATTTAGGCGGTCGCAGTTCGAAGGAACGGGACAGAAAGAATCTTCTTGAACAGACGCGATTAGAGCGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTTCTGCACTCAAGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAGCAGAACAGTCTAAACTACGAGAGAAATTCCTTAGCATCTATGGGAAGAACTGCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGAAGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCGAGAGAGTGGGGATGTTGTCCAACTTTTTGCTGCTGAGGAGTACTCGTCCAGGTGTGCTTTGGTGAACTATCGAGTGAAGCAATTTGTATATACTTGTATTCGTGCTGTACATCATAATAGGTATCACTTGAAGGACCAGCTTTTATTAACTCCGAAGGAATCTAATGCATCGGCTATTCCTTTATTGGAAGTCTTAGTATTGTTGATAGATCTCAAACTGCCATGGAGCTGTAAGATAGTAGCATGTCTGTCTAAAAACAATGCATTTAGTCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCGTGTGCTTACTGTTCTAATATGCCACATTGGTCAGAAGCCATGTATCTGTTCACCAACTGATCCAGTATATAGCTTCTCATCACAGATCCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAACAGGTTTTTGCAAAACAGGGCCTGGGCCAACATTATGTTCATCGGATGGCAACATGGTTACCAAATCTGATTAGTTCTCTTCCCAATGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAATTGGTGGAATTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGGCTATAGACCTTGCTTCTGTTACGACATTTTTGCTGGAATCATATCCATCTCCGACAAGATCTGATGGTAGAGAGAACTCTAAAATTGCTGAGGATGAAATGACTGGCGAAGATGAAGTCATGGAAGTAGTTTTGGATAGGAAATTGATTCAACAAATCTCTAATGCCATAGATACTCGCTTCCTTCTTCAACTGATAAATATATTATTTAGAGATTTTTCATCTGCCAATGATTCAGATCGTGAGCCAGAGGAGAGGGAGGTGGCAGCTGTTGGTGCAGTTTGTGGATTTTTACATGTTATCTTCAACACATTGCCTCTTGAAAAGATTATGACTGTACTTGCCTACAGAACTGAACTTGTTCCTATTCTTTGGAATTTTATGAAACGGTGCCATGAAAACAAAAAATGGTCATCCTTGTCTGAACGGTTATCATACCTCTCTGGCGATGCACCAGGTTGGCTGTTGCCGCTTTCTGTATTCTGTCCTGTTTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCACTATCACTGAAGGATATTAGAAGTCTTATCATTCTGCTAAGGCAGGTGCTGTGGCAGCTATTGTGGGTGAATCATACCACGTCTGCTAATTTGGTAAAATCTGTTCCAGTCAGCACAGCAATTAAAAAGCAGTTCGAAGCCATTCAGCAGAGGGTTAGCATTGTAGTCTCTGAGCTTCTGTCCCAGCTGCAAGATTGGAACAACAGACGACAGTTTACATCTCCCAGTGACTTTCATGCTGATGGGGTGAATGACTACTTTATCTCTCAGGCTGTTATAGAAAATACTCGAGCAAATGAAATTTTGAAGCAGGCTCCTTTCTTGATACCATTTACTAGCAGGGCTAAAATTTTCACTTCTCAACTAGCTGCTGCAAGGCAAAGACATGGATCTCAGGCTGTTTTTACTAGAAACCGGTTCAAAATACGTCGGAATCATATTTTGGAAGATGCCTACAATCAAATGAGTCAGCTGTCAGAAGATGACCTCCGAGGACTGATTCGTGTGGCTTTTGTTAATGAATTTGGAGTTGAAGAGGCAGGAATAGATGGAGGTGGAATATTTAAAGATTTCATGGAGAACATCACACGTGCTGCATTTGATGTGCAATATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCATTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTAAATGACTTGCCTTCCCTGGATCCAGAATTATATCGTCATCTTATTTTTCTTAAGCATTATGAGGGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATACGGAGAGCAAACAGAAGAGGAGCTACTTCCAGGCGGAAAGAACACCCGTGTTACTAATGAGAATGTCATTACTTTTATTCATCTTGTAGCCAATCATCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAAAAGGATTGGATTGATATGTTCAATGAGCATGAACTTCAGCTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCAGGAGGCTATCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAAAACTTTTTGAAGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTAGGATTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCCGGTGGTAATAGTTCGGAGGAAGCTCTTGACCGATTACCGACATCAGCCACCTGTATGAATTTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCAACTGGAAACCAAATTACTGTATGCCATAAATGCTGACGCTGGCTTCGATTTGAGTTAA 3096 0.3979 MFFSGDSSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSSALKIQKCFRGRKVVRAEQSKLREKFLSIYGKNCQNLDRNAFGPDSDFLRQFLYFFNAENIEDFLILVQICRLLQQFVRESGDVVQLFAAEEYSSRCALVNYRVKQFVYTCIRAVHHNRYHLKDQLLLTPKESNASAIPLLEVLVLLIDLKLPWSCKIVACLSKNNAFSLLREIILTGKDNAENCIYSEKGSSLERVLTVLICHIGQKPCICSPTDPVYSFSSQILTIPFLWHVFPNLKQVFAKQGLGQHYVHRMATWLPNLISSLPNDISDEFPTYACLLGNILEIGGIALSRPDCSFDMAIDLASVTTFLLESYPSPTRSDGRENSKIAEDEMTGEDEVMEVVLDRKLIQQISNAIDTRFLLQLINILFRDFSSANDSDREPEEREVAAVGAVCGFLHVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLSVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQVLWQLLWVNHTTSANLVKSVPVSTAIKKQFEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDYFISQAVIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRHGSQAVFTRNRFKIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGDISELELYFVIVNNEYGEQTEEELLPGGKNTRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSEHYVIEMFWEVLKGFSLENKKNFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNSSEEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1265 1031 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Pvu6g1265 1031 Pfam HECT-domain (ubiquitin-transferase) 726 1031 IPR000569 GO:0004842
Pvu6g1265 1031 Gene3D Hect, E3 ligase catalytic domain 795 874 - -
Pvu6g1265 1031 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1031 IPR044611 GO:0000209|GO:0061630
Pvu6g1265 1031 MobiDBLite consensus disorder prediction 1 28 - -
Pvu6g1265 1031 ProSiteProfiles HECT domain profile. 690 1031 IPR000569 GO:0004842
Pvu6g1265 1031 SUPERFAMILY Hect, E3 ligase catalytic domain 660 1023 IPR035983 GO:0004842
Pvu6g1265 1031 PANTHER BNAC01G43970D PROTEIN 1 1031 - -
Pvu6g1265 1031 CDD HECTc 669 1029 IPR000569 GO:0004842
Pvu6g1265 1031 Gene3D Hect, E3 ligase catalytic domains 671 909 - -
Pvu6g1265 1031 Gene3D Hect, E3 ligase catalytic domain 913 1030 - -
Pvu6g1265 1031 SMART hect_3 688 1031 IPR000569 GO:0004842
Pvu6g1265 1031 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1265 Pvu-Chr6 23643471 23669408 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1265 K10589 - gmx:100787467 1875.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1265 6 23643471 23669408 Pvu6g1265 6 23643471 23669408 ECH
Pvu3g1228 3 29565314 29587144 Pvu6g1265 6 23643471 23669408 PCT