Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1228 ATGTTCTTCAGCGGTGATCCTTCTACGCGGAAGCGTGTCGATTTGGGAGGTCGCAGCTCAAAGGAAAGGGACCGAAAGAACCTTCTAGAACAGACGCGAGTTGAAAGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGTACTCAGAATTCAGAAATGCTTCAGAGGAAGAAAAGCTGTCAAAACTGAACAATATAAGTTACGAGAGCAGTTCTATGAAGCCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGTCAGTTCCTCTATTTCTTTAAGGCAGACAATATTGATGATTTTTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAGGATAATGGGGACGTTGTGAAACTTTTTGCGGGGGTGGATTACTCTTCCACCCGTGCTTTCGTGATTTACCGAGTGAAGCGATTTGTACAGGCTTGTATTCGTGCTTTGCATCAGAATAGAAAGCAGCTAAAAGATCAGCTTTTGTTGACTCCTGAGGAATTGAATGTATCAGCTGTTCCTTTATTGGAGGTTTTAGTATTGTTAGTTGATTCCAAATTGCCATGGAGCTGTAAGATACTAGAATATCTTTTTCAAAACAATGCACTTGGCCTACTCAGAGAGATCATTCTTACAGGGAAGGATAATGCAGAAAATTACTTTTCTGCCGGCAAGGGTTCATCATTGGAGCGTGTACTTATGGCTGTAGTACGTCATGCTGGTCAGAAGCCATGTATCTGTTCACATATTAATACAAGATATAGTTTTGCATCTCAGATCATCACAATTCCTTTTTTGTGGCATCTTTTCCCTAATTTACAACAGGTTTTTGCGGCAGAGGAGCTGAGCCAATTTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAATTTGCTACCTAAGGATATATCAAATGAATTTCCTAGCCATGCATGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTCTCTGTTCATTTGATATGGCAATAGACCTTGCGGCTGTCACTACACTTTTGCTGGAGGCACTCCCATCTGTGAAAACTTTCAATGGTTCTATGAGCGTTGAAGATGATATGACGGGAGATGAATTCATGGAAATAACTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCCATAAATCCTCGCTTCCTTCTACAACTGACAAACATACTATTTAAAGAGATTTCATCTGTCAATGATTCAGATTATGGACCCGAAGATAGAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCAGCAAGCTGCCACTTGAGCGGATCATGACTGTGCTTGCTTACAGAACTGAACTTGTTGTTACGCTTTGGAATTTTATGAAGAAGTGTCATGAGAACCAAAAATGGTCATCACACCCCTCAAATGATGCAGCTGGCTGTCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTCTATGAGCAGGAGAAACCGCTATCACTTAATGATATTAGGACCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATACTACATCTGCTAATTCAGTAAAATCAGTTCCAATTAGTTCAGCTAGAAAGGGGCAGTTTGTTCAGGCCATTCAACAGAGGGTTAGCATTGCGGTCTCTGAGCTTCTCTCACAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCACAGTAACTTCCATGCTGATGGTGTGAATGACCTATTTATCTCTCAGGCTTTAGTAGAAAGTACACGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATACTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGATCTCAGGCTGTATTTAGTAGGAATCGGTTCAGAATAAAACGAGACCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATTGATGCGGGTGACTTTTGTCAATGAATTTGGAGTCGAAGAGGCTGGAATTGATGGCGGTGGAATTTTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCGGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGATTTGCCCTCCTTGGACCCAGAATTATATCGCCATCTCATTTTTCTCAAGCATTATAAGGGAGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTCATTCCTGGGGGAAGGAACCTACGTGTCACTAATGAGAATGTTATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAGAGTTCACATTTCTTGAGGGGATTTGAGCGACTTATTCCGAAGGATTGGATTGATATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCAGTTGACAGCTTGGATATTGTTGATCTACGGCTGCACACAAACTATGCAGGAGGTTATAATAGTGAGCACTATGTTATCGAGATGTTTTGGGAAGTTCTTAAAGGCTTTTCGTTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGAAATCTTGAACCTTTGTTTTGCATACAAAGGGCTTCCAGTAATGCTGCGGAGGAATCACTCGACCGATTACCGACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGCTTTAAACAACCATTATAA 3021 0.4052 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLRIQKCFRGRKAVKTEQYKLREQFYEAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADNIDDFLVLVQICRLLWWFVQDNGDVVKLFAGVDYSSTRAFVIYRVKRFVQACIRALHQNRKQLKDQLLLTPEELNVSAVPLLEVLVLLVDSKLPWSCKILEYLFQNNALGLLREIILTGKDNAENYFSAGKGSSLERVLMAVVRHAGQKPCICSHINTRYSFASQIITIPFLWHLFPNLQQVFAAEELSQFYIHQMAKFGQNLINLLPKDISNEFPSHACMLGNVLETAGIALSHPLCSFDMAIDLAAVTTLLLEALPSVKTFNGSMSVEDDMTGDEFMEITLDRKLEQQINNAINPRFLLQLTNILFKEISSVNDSDYGPEDREVTAVDAVCGFLHVTFSKLPLERIMTVLAYRTELVVTLWNFMKKCHENQKWSSHPSNDAAGCLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLNDIRTLIIILRQVLWQLLWVNHTTSANSVKSVPISSARKGQFVQAIQQRVSIAVSELLSQLQDWNNRRQFTSHSNFHADGVNDLFISQALVESTRANEILKQAPFLIPFTSRVKIYSSQLAAVRQRHGSQAVFSRNRFRIKRDHILEDAYNQMSQLTEDSLRGLMRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELIPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFERLIPKDWIDMFNEHELQLLISGSVDSLDIVDLRLHTNYAGGYNSEHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQRASSNAAEESLDRLPTSATCMNLLKLPPYTSFKQPL* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1228 1006 Pfam HECT-domain (ubiquitin-transferase) 717 1001 IPR000569 GO:0004842
Pvu3g1228 1006 Gene3D Hect, E3 ligase catalytic domain 904 1005 - -
Pvu3g1228 1006 Gene3D Hect, E3 ligase catalytic domain 786 865 - -
Pvu3g1228 1006 SUPERFAMILY Hect, E3 ligase catalytic domain 650 1003 IPR035983 GO:0004842
Pvu3g1228 1006 CDD HECTc 660 1004 IPR000569 GO:0004842
Pvu3g1228 1006 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1004 IPR044611 GO:0000209|GO:0061630
Pvu3g1228 1006 PANTHER BNAC01G43970D PROTEIN 1 1004 - -
Pvu3g1228 1006 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Pvu3g1228 1006 ProSiteProfiles HECT domain profile. 681 1003 IPR000569 GO:0004842
Pvu3g1228 1006 Gene3D Hect, E3 ligase catalytic domains 662 900 - -
Pvu3g1228 1006 MobiDBLite consensus disorder prediction 1 22 - -
Pvu3g1228 1006 SMART hect_3 679 1004 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1228 Pvu-Chr3 29565314 29587144 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1228 K10589 - gmx:100789933 1806.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1228 3 29565314 29587144 Pvu3g1228 3 29565314 29587144 ECH
Pvu3g1228 3 29565314 29587144 Pvu6g1265 6 23643471 23669408 PCT