Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1192 ATGCCCTACCCTACCCTACCCAACTCAACCGTCCTCATAATTAACTGTTGTCACTATTTACAGTTTCTAACAGTAACAACCATGGTCACAGCAGCGACCGCCTCATCATCATTTATTTATTCTCTCTTCCACAATCTCTGCACTCTCTCACCCCCGCAAACTGCAACCATGGAAGTGAAGAAAAAAACCACAAATGGCCTTCTCTTCCTGTCTCTCGCCCTCACCCTCTCTGCCGCCGCCGCCACCACCACCTCCCTCCCATTCCAACTCCAAACCCAAACCTTAACCTTGTCTCTCCACTCCCTCCCCCACTCACCCACCCTCTCATGGCCCCAAGCCGAAGCCCTTGCAGAACCCGACCCGGAAGAAGCTCTCTCCCTTAACCTCCATCACATAGATGCACTCTCCTCCAACAAAACCCCGGAGCAGCTCTTCCACCTCAGACTCCAACGCGACGGCAAAAGAGTCCAATCCCTACTCACGCTCGCAGCCCTCAACAGCAGCCACGCGCGCAGATCCGGCTCCGGTTTCAGCAGCTCCATCATATCGGGCCTAGCACAAGGAAGCGGCGAGTACTTCACGCGCATAGGCGTGGGTACTCCCGCTAAGTACGTCTACATGGTTTTGGACACCGGAAGCGACGTAGTTTGGCTCCAATGCGCCCCCTGCCGCAAATGCTACACCCAAACCGACCCCGTTTTCGACCCCACCAAATCCCGCACTTACGCCGGAATCCCCTGTGGAGCCCCTCTCTGCCGCAGGTTAGACTCTCCAGGCTGCAACAAGAACAAGGTTTGCCAGTACCAGGTTTCCTACGGCGACGGTTCCTTTACATTCGGCGACTTCTCCACCGAAACACTGACGTTTCGGAGGACAAGAGTCACGCGCGTCGCACTTGGCTGTGGCCACGACAACGAAGGACTCTTCATAGGCGCTGCTGGTTTATTGGGCCTGGGCCGGGGCAGGTTATCGTTTCCTGTCCAGACCGGACGCCGGTTCAACCAGAAGTTCTCTTACTGCCTCGTGGACCGTTCAGCCTCGGCCAAACCATCCTCCGTTGTCTTCGGAGATTCTGCTGTTTCCCGAACCGCGCGATTTACTCCTCTCCTTCAAAACCCTAAGCTCGATACTTTCTACTACGTGGAGCTCCTCGGGATCAGTGTCGGGGGCACGCCGGTGCGTGGCCTCTCCGCCTCGCTATTCCGCCTAGACTCCGCCGGTAACGGCGGAGTCATCATCGACTCGGGCACGTCCGTCACCCGCTTGACCCGACCCGCCTACATTGCCCTCCGAGACGCGTTCCGTGTGGGAGCCTCGCGCCTGAAGAGAGCGTCGGAGTTCTCGCTCTTTGACACGTGTTTCGATCTGTCTGGGCTCACTGAGGTAAAAGTGCCGACGGTGGTGCTGCACTTCCGCGGTGCCGACGTGTCACTTCCAGCGTCGAATTACTTGATTCCGGTGGATAATAGCGGGAGTTTCTGCTTCGCTTTTGCGGGAACCATGAGCGGTTTGTCCATAATTGGTAACATCCAGCAACAAGGATTCCGGGTCTCATACGACCTGGGGGGTTCGCGGGTCGGGTTTGCTCCGAGAGGTTGCGTTTGA 1605 0.5695 MPYPTLPNSTVLIINCCHYLQFLTVTTMVTAATASSSFIYSLFHNLCTLSPPQTATMEVKKKTTNGLLFLSLALTLSAAAATTTSLPFQLQTQTLTLSLHSLPHSPTLSWPQAEALAEPDPEEALSLNLHHIDALSSNKTPEQLFHLRLQRDGKRVQSLLTLAALNSSHARRSGSGFSSSIISGLAQGSGEYFTRIGVGTPAKYVYMVLDTGSDVVWLQCAPCRKCYTQTDPVFDPTKSRTYAGIPCGAPLCRRLDSPGCNKNKVCQYQVSYGDGSFTFGDFSTETLTFRRTRVTRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSAVSRTARFTPLLQNPKLDTFYYVELLGISVGGTPVRGLSASLFRLDSAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASRLKRASEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPASNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSYDLGGSRVGFAPRGCV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1192 534 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 411 422 IPR001969 GO:0004190|GO:0006508
Pvu6g1192 534 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 96 533 - -
Pvu6g1192 534 PANTHER ASPARTYL PROTEASES 96 533 IPR001461 GO:0004190|GO:0006508
Pvu6g1192 534 SUPERFAMILY Acid proteases 185 533 IPR021109 -
Pvu6g1192 534 Pfam Xylanase inhibitor N-terminal 192 357 IPR032861 -
Pvu6g1192 534 CDD cnd41_like 191 533 IPR033873 -
Pvu6g1192 534 Pfam Xylanase inhibitor C-terminal 379 529 IPR032799 -
Pvu6g1192 534 Gene3D Acid Proteases 355 534 IPR021109 -
Pvu6g1192 534 ProSiteProfiles Peptidase family A1 domain profile. 192 529 IPR033121 -
Pvu6g1192 534 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 207 218 IPR001969 GO:0004190|GO:0006508
Pvu6g1192 534 Gene3D Acid Proteases 170 354 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1192 Pvu-Chr6 22907064 22909082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1192 167 533 Miscellaneous Gene Families AT1G77480 27.228 3.02e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1192 K22683 - gmx:100794269 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1192 6 22907064 22909082 Pvu10g1196 10 38024472 38026349 PCT