Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1196 ATGAACATGGAAGAGAAAGTAAAGTACCATTTTTTCTCTTCCTTGCTAACCTTCTTCATGTGTTTCTGTGTTTGTGCCGCTTACACTGAACCACTCAAATCCCAAACCCTCATTCTCCGTAACCTCCCCAACCCACCCACACTCTCTTGGCCCGAATCCACCACCTTAGGCTCCGATTCGGAACCCGACCCGGACACCATCTCCGTTAACGTCCACCACATAGACGCGCTCTCTCTCAACAAAACCCCCTCCCAACTCTTCCACTTTAGGCTCCAACGGGACGCCGCTAGAGTCAAAAGCCTCTCCTCCCTCGCCGCATTGAACCAAACCCGACCTACCACTTCCGGGTCGGGTTTCAGCAGCTCTGTCATTTCGGGTCTCGCACAGGGTAGTGGTGAATACTTCACGCGCCTAGGCGTGGGAACTCCTCCGAAGTATGTCTACATGGTCCTTGACACTGGAAGCGACGTCGTTTGGCTCCAATGCAAACCCTGCGCCAAATGCTACTCCCAAACCGACGAAATCTTCGATCCCTCGAAGTCCTCATCTTTCGCCGGAATATCCTGCTCCTCCCCCCTGTGCCGCAGCCTTGACTCGCCGGGATGCAGCAGGAAAAGCAGCAATTGCCAGTATCAGGTTTCCTACGGCGACGGGTCGTTCACGTTCGGCGATTTCTCAATGGAAACCCTCACATTCCGACGAGCCCAAGTCCCGCGTGTTGCCCTCGGCTGCGGCCACGACAACGAGGGCCTCTTTGTGGGCGCCGCAGGTTTGTTGGGCCTAGGTCGCGGTGGGTTGTCGTTCCCAACCCAAGCCGGAACCCGGTTCAACAACAAATTCTCCTACTGTTTAACCGATCGAACCGCTCCCGCCAAACCGTCTTCAATTGTGTTTGGCGACTCGGCCGTTTCGCGAACCGCGCGGTTCACTCCTATAATTAATAACCCTAAACTAGATACCTTTTACTATCTCGAGTTACTCGGTATTAGCGTTGGCGGCGCGCCGGTTCGGGGCATTTCGGCTTCACTCTTTCGGCTTGATTCGACCGGGAATGGTGGAGTGATTATTGACTCGGGGACTTCCGTGACCCGCCTCACGCGACCTGCTTACGTGGCTCTCAGAGACGCGTTTCGGGTTGGAGCTTCTCATTTGAAGCGCGCGCCCGAGTTCTCGCTTTTCGACACGTGTTATGATCTGTCGGGGATATCGGAAGTTAAGGTTCCAACCGTGGTGATGCATTTCCGCGGTGCCGACGTGTCGTTTCCGGCGGCGAATTATCTCATTCCGGTGGATAATAGCGGCAGATTCTGCTTTGCTTTCGCCGGAACGATGAGTGGGCTTTCTATTATTGGGAACATTCAACAGCAAGGGTTTCGGGTCGTGTTCGATTTGGCGGGTTCTCGGGTCGGATTTGCCCCAAGAGGGTGCGCGTGA 1434 0.5488 MNMEEKVKYHFFSSLLTFFMCFCVCAAYTEPLKSQTLILRNLPNPPTLSWPESTTLGSDSEPDPDTISVNVHHIDALSLNKTPSQLFHFRLQRDAARVKSLSSLAALNQTRPTTSGSGFSSSVISGLAQGSGEYFTRLGVGTPPKYVYMVLDTGSDVVWLQCKPCAKCYSQTDEIFDPSKSSSFAGISCSSPLCRSLDSPGCSRKSSNCQYQVSYGDGSFTFGDFSMETLTFRRAQVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPTQAGTRFNNKFSYCLTDRTAPAKPSSIVFGDSAVSRTARFTPIINNPKLDTFYYLELLGISVGGAPVRGISASLFRLDSTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGASHLKRAPEFSLFDTCYDLSGISEVKVPTVVMHFRGADVSFPAANYLIPVDNSGRFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAGSRVGFAPRGCA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1196 477 Gene3D Acid Proteases 298 477 IPR021109 -
Pvu10g1196 477 ProSiteProfiles Peptidase family A1 domain profile. 134 472 IPR033121 -
Pvu10g1196 477 Pfam Xylanase inhibitor N-terminal 134 300 IPR032861 -
Pvu10g1196 477 Gene3D Acid Proteases 113 297 IPR021109 -
Pvu10g1196 477 CDD cnd41_like 133 476 IPR033873 -
Pvu10g1196 477 Pfam Xylanase inhibitor C-terminal 322 472 IPR032799 -
Pvu10g1196 477 SUPERFAMILY Acid proteases 127 476 IPR021109 -
Pvu10g1196 477 PANTHER ASPARTYL PROTEASES 31 476 IPR001461 GO:0004190|GO:0006508
Pvu10g1196 477 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 31 476 - -
Pvu10g1196 477 PRINTS Pepsin (A1) aspartic protease family signature 140 160 IPR001461 GO:0004190|GO:0006508
Pvu10g1196 477 PRINTS Pepsin (A1) aspartic protease family signature 354 365 IPR001461 GO:0004190|GO:0006508
Pvu10g1196 477 PRINTS Pepsin (A1) aspartic protease family signature 448 463 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1196 Pvu-Chr10 38024472 38026349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1196 124 476 Miscellaneous Gene Families AT1G77480 27.461 9.94e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1196 K22683 - gmx:100808163 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1196 10 38024472 38026349 Pvu10g1196 10 38024472 38026349 ECH
Pvu6g1192 6 22907064 22909082 Pvu10g1196 10 38024472 38026349 PCT