LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g1185	ATGGCACCAAGATACAGTCGCGCAAAGGCCAAGGGAGAGAAGAAGAAGAAGGAAGAAAAAGTTCTTCCTGTTGTAATGGATATCACTGTCAACCTCCCCGATGAAACACATGTTGTTCTCAAGGGGATATCAACAGACAAAATCATTGATGTTCGTCGGCTTTTATCGGTGAATACAGAGACTTGTTATATCACCAATTTTTCCCTATCTCACGAGGTGAGAGGACCGCAACTGAAGGACACGGTGGACGTGTTGGCACTGAAGCCATGCGTCCTCACTTTAATCGAAGAGGATTATGACGAAGATAGAGCAGTGACCCACGTCAGACGGCTACTAGACATCGTGGCCTGCACGACGAGCTTCGGCCACTCGTCGGAGGCGAAGAATGTGAACTCTCACGCGCCGCCGCCATCGGCGGCAGCGGTTGACGGAGATGGCGAGATAAGCCACTCGTGCCCTAGGCTGGGGAGCTTCTACGAGTTTTTCTCTCTTTTGCATCTCACTCCTCCTTTCCAATATATAAAGAAAACAGTGAGACGACGAGTTCCGGAGATATTAGAGGCGGATCATCTCTTCTCCTTTGATGTGAAGCTATGTAACGGGAAAGTAGTCCACGTTGAAGCTTGCAGAAATGGATTTTGCAGTTTTGGAAAGCAGCAGATATTTAGTCATAACCTTGTTGATTTGTTAACACGGCTTAGTAGAGCTTTTGATACTGCGTATGATGATCTATTAAAAGCATTTTCAGAACGTAACAAGTTTGGGAATCTCCCTTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTGCAGTGGCGCAATCACCGTCAGTTTTCCCTCCACTTCCTGTGGAGGATGAAAATTGGGGAGGAAATGGTGGCGGTCTAGGGAGGGATGGGAAATTTGATTTGATTCCTTGGGCAAAGGAGTTTTCATTTATTGCATTTATGCCTTGCAAGACAGCAGAAGAAAGGCAAATCCGTGATAGAAAAACGTTCCTTCTCCACACCTTATTTGTTGATGTAGCCATTTTGAGAGCTATTAGGGCTGTTAAACATGTAATGGAAGAGTCAGATTTACAGAGTTCTATTACAGAAAATGATATTATTTTCACCGACAGAGTAGGTGACTTGAGTATTAGAGTAATGAAGGATGCTTCTGTCGTTAACCGCAAGGTTGATTCGAAAATTGATGGAGTTGAAACTACTGGAATAAATCAAAAGGATCTAATACAGAGAAATCTTCTGAAAGGAATTACTGCTGATGAGAATACCGCAGCCCATGATATTACCACTTTAGGTGTTGTTGTTGTGAGATATTGTGGTTATGTGGTTGCTGTGAAAGTTGAGGGGGGAGAAAATGAAAATGTCAACTCTTCATCTTATCAAAGTATTGAATTGTTTGATCAACCAGATGGTGGTGCCAATGCACTCAACATTAACTGTTTAAGACTACTTCTCAACTCAGCACAGTTGGAGAAGAATAGACCCAATCAGATGCAAATGCCTGAGACTGAAGAGCTTGGAGTTTCTCAAGCTTTTGTGGAGAGGCTTATTAAAGAAAGCCTTTCTAAACTTGAGGAAGAGGAACCTGGTTTGGACAATTTCATAAGATGGGAACTTGGAGCATGCTGGATACAACATTTGCAAGACCACAATACTGAAAAGGATAAAAAACCGTTGTTGGATAAGGCTAAGAATGAAATGAAGGTTGAGGGGCTAGGGAAACCCTTTAAATCCCTCAAGAATAATAAAAATAAATCTGATCTTAGTGTGAAACTGGCATCTGAAAACTCCAAATCTCATCTGGCATGTATTAATGGAGAACCTGAAAGTGCTTTGGTGCCCTCGGTAGAATCCAAACATGAAACAGCAGCAGCAGAAAATGAGCTTGTGCTAAAGGGTTTGCTATCTGAAGCAGCTTTTACTCGGTTAATAGAATCAGGAACTGGACTTCACAGCAAGTCAATGCAAGAGCTGATTGACTTGTCTCAGAAATATTACATGGATGTTGCTCTCCCAAAGCTGGTTGCAGATTTTGGCTCATTGGAACTCTCTCCTGTGGACGGACGCACCTTAACTGATTTTATGCATACTAGGGGTCTACGTATGCGTTCTCTTGGACATGTTGTCAAGCTTTCTGAAAAACTATCACATGTACAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTCAAGCATATCCTGCAGGCAGTGATTGCAGTTGTTGACAAGGAGAAAATGGCTGCATCCATTGCTGCTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAACAGAGAGTCAGATAAATCGTGCAAAATCCACCCCCTTGTATGGAAATGGCTAGAGGTATTTCTGAAGAAGCGATTTGATTGGGATCTTAGCAGCTTGAATTACAGTGATGTGAGGAAGTTTGCGATTTTGCGTGGCTTATGTCATAAGGTTGGGATTGAGTTTGTTCCAAGGGATCTTGATATGGATTGTCCAATTCCCTTCCAGAAATCTGATATTGTAAGCTTGGTCCCAGTTCACAAGCAAGCAGCATGCTCATCCGCAGATGGCAGGCAGCTATTAGAGTCATCAAAAACAGCTTTAGACAAGGGAAAGCTAGAAGATGCAGTTTCCTATGGAACAAAGGCTCTTGCCAGACTTGTAGCAGTTTGTGGCCCCTATCATCGGATGACAGCGGGAGCATACAGCTTACTTGCTGTAGTTTTATATCACACTGGAGACTTCAATCAGGCTACAATTTATCAACAAAAAGCTCTGGATATTAATGAGAGAGAGCTGGGTCTGGATCATCCAGATACTATGAAGAGTTATGGGGATCTTGCAGTTTTCTACTACAGACTTCAACATACAGAGCTGGCTCTGAAGTATGTAAAGCGCGCTTTATATCTTCTGCATCTAACGTGTGGCCCATCTCATCCAAACACTGCTGCAACATACATTAACGTGGCTATGATGGAGGAAGGTCTTGGAAATGTACATGTCGCTCTTAGATATCTTCACAAAGCTCTAAAGTGCAACCAAAGATTACTTGGTCCAGATCATATTCAGACTGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCTTTGAGCGTACAGCATGAGCAAACAACATTGCAAATTCTGCGGGCAAAACTTGGTCCAGATGACTTGCGGACTCAGGATGCTGCTGCTTGGCTTGAGTATTTTGAGTCCAAGGCTATAGAACAACAAGAAGCTGCACGGAATGGTACTCAAAAGCCAGATACATCTATTGCTAGCAAAGGCCATCTAAGTGTGTCAGACTTGCTTGACTACATTAATCCAAGTCATGATCCCAAAGGGAGAGATATTGCACTAAGGAAAAGAAGCCAGATAACTAAGATGAGGATGGAATCCTGCCAGAACATTGGCTCAGCAAGTTCTGATGAGTCATGGAAAGAAACTCCAAGAGAGACTTCAGATGAAGTAATACTCATACCTGGAGCAGGTGTTGCTGTAGATACTGATCTGGAGACCAACTCAGCACCTGATTCAGAACAGCCCATTTTAGAAAAGACCTCGGATGAAAAACAAGTTTCTGTTGAAATATTGTCTGAAGCACCTGCTGATGGTGAGGATGGATGGCAACCAGTTCAACGGCCAAGATCATCTGGTTCAAATGGCCAGCGGCTGAAGCAAAGACGAGCAACAATTGGTAAAGTTTATTATCAGAAAAAGAAAGTGGAATCTGACATAGACTATACTTATGGGAAGAGTAGTGATCAGAACAGTAGATATTATATTGTGAAGAAGAGAACAATATCCCATGGTGTTTATGCTGATGATCATAGTGTAAACATATCCCAAGGTACTAAATTTGGAAGGAAAGTGGTCAAAGCTGTTGCATACAGGGTGAAGTCCATGTCTGCATCTGATAAGACTACTGTAAAAGATTCATCAGAAATTGGTGACAAACTAATCAGTTCTTATTCACAACTTGGTTCAGTTTCATCACCAAATGATAATAGTACTATGAAGACTTCTATAGTTAGTATTGGGAAATCTCCTTCATACAAAGAAGTGGCAGTGGCTCCTCCTGGGACAATTTCCAAGTTGCAAATCTATAATCCTCAAAGTAACATTCCTGGTTTTGGCGTGGGCAAACATGAAGAGGAAGATTTTAGAATTCATTCAAATTCTGAACCAACCCCGGAAGAGGTAAAAAGTACATTAAAAGCGAAGGAAAAAAATTCTCTCTCAAATTCTTTGGATGATTCAAATCATACTAATGATTCTGAAAGGAAACAAACACAGTTTACTGATTCTGTTCAAGAAAATTTGGAGAGTGCTAAATGGGTTGATTCTGTGGATGTTGAGGTTCATGAAACAGTTGATAATATCATAATGATTGATGCAGTGGAGGATCATGTGGATTCTCATAAACTTGAGGTTGACACTAGCAACTCTGACTGTTTTGAACTCCCTAATCATACCATCTCACAAGAAGGTGAAGATTTAAGAGTCAGTGTTTCTCCATCAAGTCAGGGTGATTCCCAGGGCATCCCATATAAGAAGTTATCTGCATCTGCAGCTCCATTCAATCCGGCACCAGGCATTGCTCGAGCTGCACCAGTTGCCTTGAATGCAACACTTCCTTCTGCTTCTGGTGCTGTTCCGCCAATTGGCCCCTGGCCAGTAAATATGAATGTTCGCCATGGACCTGCTACCATGTTACCAGCAGTTACCCAAATGTGTTCGACTCCTCACCATGTATACCCATCTCCTCCACCTACACCAAACATGATACAACCATTGCCATTTATGTATCCTCCTTATACTCAGCCTCAATCAATACCATCCACCAATTTTCCAGTTACTAGTAGTGCATTTCATGTCAATCAGTTCACATGGCAATGTAGTATGAACCCGACTGCATCTAATTTTGGTCCCAATGCAGTATGGCCTGGTTGTCATCCGGTGGAATTTCCTCTTCTAGCGCCTAGCACCAAACCAATCCCTGATTCCATTTTGGAGCCACAAAAACAGTGTCATGTTTCAAAAAATTCTAGCTCAGCTTTTGTTCTGCCAGAGGGCACTAATAACGTTGGTGGATACAAGAAAGAGGTGCAACCTTTAGAATCAGAGACTAGCGAGGATGAAGTGGGTAGAGTTCACACAGAAAGTGTAAAGGAAAATGGGAATCCTAATTTTCATGGGTTTGAAAATGCTGGCGACAAACCCAATAATAACATTGGCTTGAGTAAGATCAGCAGAAATGAAAAGAACATAGATGGTGAGAAAACCTTCAGTATTTTGATTAGGGGAAGAAGAAACCGGAAGCAGACACTAAGAATGCCAATAAGTTTGCTAACTAGACCCAATAGCTCACAGTCATTCAAGGTTATTTATAACCGTGTAGTTAGAGGAAGTGATGTACCCAAGTCCATCAACTTATCTTCTGGAAGAGATTAG	5466	0.4204	MAPRYSRAKAKGEKKKKEEKVLPVVMDITVNLPDETHVVLKGISTDKIIDVRRLLSVNTETCYITNFSLSHEVRGPQLKDTVDVLALKPCVLTLIEEDYDEDRAVTHVRRLLDIVACTTSFGHSSEAKNVNSHAPPPSAAAVDGDGEISHSCPRLGSFYEFFSLLHLTPPFQYIKKTVRRRVPEILEADHLFSFDVKLCNGKVVHVEACRNGFCSFGKQQIFSHNLVDLLTRLSRAFDTAYDDLLKAFSERNKFGNLPYGFRANTWLVPPAVAQSPSVFPPLPVEDENWGGNGGGLGRDGKFDLIPWAKEFSFIAFMPCKTAEERQIRDRKTFLLHTLFVDVAILRAIRAVKHVMEESDLQSSITENDIIFTDRVGDLSIRVMKDASVVNRKVDSKIDGVETTGINQKDLIQRNLLKGITADENTAAHDITTLGVVVVRYCGYVVAVKVEGGENENVNSSSYQSIELFDQPDGGANALNINCLRLLLNSAQLEKNRPNQMQMPETEELGVSQAFVERLIKESLSKLEEEEPGLDNFIRWELGACWIQHLQDHNTEKDKKPLLDKAKNEMKVEGLGKPFKSLKNNKNKSDLSVKLASENSKSHLACINGEPESALVPSVESKHETAAAENELVLKGLLSEAAFTRLIESGTGLHSKSMQELIDLSQKYYMDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILQAVIAVVDKEKMAASIAAALNLLLGVPENRESDKSCKIHPLVWKWLEVFLKKRFDWDLSSLNYSDVRKFAILRGLCHKVGIEFVPRDLDMDCPIPFQKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVSYGTKALARLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAIEQQEAARNGTQKPDTSIASKGHLSVSDLLDYINPSHDPKGRDIALRKRSQITKMRMESCQNIGSASSDESWKETPRETSDEVILIPGAGVAVDTDLETNSAPDSEQPILEKTSDEKQVSVEILSEAPADGEDGWQPVQRPRSSGSNGQRLKQRRATIGKVYYQKKKVESDIDYTYGKSSDQNSRYYIVKKRTISHGVYADDHSVNISQGTKFGRKVVKAVAYRVKSMSASDKTTVKDSSEIGDKLISSYSQLGSVSSPNDNSTMKTSIVSIGKSPSYKEVAVAPPGTISKLQIYNPQSNIPGFGVGKHEEEDFRIHSNSEPTPEEVKSTLKAKEKNSLSNSLDDSNHTNDSERKQTQFTDSVQENLESAKWVDSVDVEVHETVDNIIMIDAVEDHVDSHKLEVDTSNSDCFELPNHTISQEGEDLRVSVSPSSQGDSQGIPYKKLSASAAPFNPAPGIARAAPVALNATLPSASGAVPPIGPWPVNMNVRHGPATMLPAVTQMCSTPHHVYPSPPPTPNMIQPLPFMYPPYTQPQSIPSTNFPVTSSAFHVNQFTWQCSMNPTASNFGPNAVWPGCHPVEFPLLAPSTKPIPDSILEPQKQCHVSKNSSSAFVLPEGTNNVGGYKKEVQPLESETSEDEVGRVHTESVKENGNPNFHGFENAGDKPNNNIGLSKISRNEKNIDGEKTFSILIRGRRNRKQTLRMPISLLTRPNSSQSFKVIYNRVVRGSDVPKSINLSSGRD*	1822

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g1185	1821	SUPERFAMILY	TPR-like	862	1050	IPR011990	GO:0005515
	Pvu6g1185	1821	ProSiteProfiles	Clueless (Clu) domain profile.	285	560	IPR025697	-
	Pvu6g1185	1821	Pfam	Mitochondrial function, CLU-N-term	45	115	IPR028275	-
	Pvu6g1185	1821	MobiDBLite	consensus disorder prediction	1393	1439	-	-
	Pvu6g1185	1821	Gene3D	Tetratricopeptide repeat domain	852	1104	IPR011990	GO:0005515
	Pvu6g1185	1821	CDD	CLU-central	687	827	IPR033646	-
	Pvu6g1185	1821	MobiDBLite	consensus disorder prediction	1217	1231	-	-
	Pvu6g1185	1821	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3	1	1807	IPR027523	GO:0006996
	Pvu6g1185	1821	MobiDBLite	consensus disorder prediction	1172	1232	-	-
	Pvu6g1185	1821	SMART	tpr_5	981	1014	IPR019734	GO:0005515
	Pvu6g1185	1821	SMART	tpr_5	939	972	IPR019734	GO:0005515
	Pvu6g1185	1821	SMART	tpr_5	897	930	IPR019734	GO:0005515
	Pvu6g1185	1821	Pfam	Tetratricopeptide repeat	980	1054	-	-
	Pvu6g1185	1821	Pfam	Tetratricopeptide repeat	896	966	-	-
	Pvu6g1185	1821	PANTHER	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	1	1807	-	-
	Pvu6g1185	1821	Pfam	Translation initiation factor eIF3 subunit 135	685	824	IPR033646	-
	Pvu6g1185	1821	MobiDBLite	consensus disorder prediction	1138	1158	-	-
	Pvu6g1185	1821	MobiDBLite	consensus disorder prediction	1393	1433	-	-
	Pvu6g1185	1821	ProSiteProfiles	TPR repeat profile.	897	930	IPR019734	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g1185	Pvu-Chr6	22857636	22874113	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g1185	K03255		-	gmx:100784117	2537.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g1185	6	22857636	22874113	Pvu10g1190	10	37947883	37964691	PCT