Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1190 ATGGCACCAAGAAACAGTCGCGGAAAGGCCAAGGGTGAGAAGAAAAAGAAGGAAGAAAAGGTTCTTCCAGTTGTCATAGACATCACAGTGAAGCTTCTTGATGAAACTCATGTTCTCAAGGGAATTTCAACAGACAGAATAATAGACGTTCGTCGGCTTTTATCAGTGAATACGGACACGTGTTATGTCACAAATTTTTCCCTGTCTCATGAGGTAAGAGGGTCACGTCTGAAGGACACGGTGGACGTGTCCGCACTGAAGCCCTGCCTCCTCACTTTAGTTGAAGAGGAATACAATGAAGAACGAGCAGTGGAGCACGTGCGAAGACTCCTTGACATCGTCGCCTGCACCACGAGCTTCGGTCCGTCGCCGCCTCCGCCACCGAAGGTCGCCGCCGGCACAGTTACGAAGTCCGGCAAGTCCGAGGTCCCGCCAGCGAAAGATGCGGCGGTGACGGTTGCGGACGTGGACGGCGAGATAAGCCACTCGTGCCCTAAGCTGGAGAACTTCTACGAGTTTTTCTCTCTCTCGCACCTCACCGCACCTATACAATATGTGAAGAAAGGTTCGAGACGGCGCGTGGAGGAGATATCGGAGGCGGATTATCTGTTCTCGCTGGATGTTAAGGTGTGCAACGGGAAAGTGGTGCACGTTGAGGCTTGCAGGAAGGGATTCTACAGCGTTGGGAAGCAGCGGATTCTGTGCCATAATCTGGTTGATTTGTTGAGACAGATTAGCAGAGCTTTTGATAATGCTTTCGATGACCTCTTGAAGGCATTTTCAGAGCGTAACAAGTTTGGGAATCTCCCATATGGCTTCAGAGCCAACACGTGGCTTGTTCCTCCTGTTGCTGCACAGTCACCCTCATCTTTTCCTCCTCTTCCTGTGGAGGATGAAACATGGGGAGGAAATGGTGGTAGTCTCGGAAAAGACGGAACGTATGATTTGATTCCTTGGGCCAAAGAGTTTTCATTAATTGCATCTATGCCTTGCAAGACAGCAGAAGAAAGACAAGTTCGTGATAGAAAAGCATTTCTTCTGCACAGCCTGTTTGTTGATGTTTCTATTTTCAGAGCAATAGGGGCTGTTAAACATGTTATGGAAGAACCCAATGTTAGTTGCTCCGTTGTAGAAAATAATGTTGTTTACACTGAGAGAGTAGGTGACTTGAGTATCAAGGTCTTGAAAAATGGTTCTATTGCAAGCTGTAAGATTGATACTAAAATTGATGGAGTTGAAGCTACTGGAGTAAATCAAAAGGATCTAATAGAGCGAAATCTACTGAAAGGCATCACTGCTGATGAAAATACTGCTGCCCATGATATTACCACTTTAGGTGTCATTAATGTAAGATACTGTGGTTATGTGGTCGTTGTGAAAGTTGAGGGTGGAGTCAGGGAAAATGTTGTCTCTCCATCGCAACAAATTATTGAATTGTTTGATCAGCCAGAGGGTGGTGCCAACGCACTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAGCTCCACCAGAAAACAATAAACCAATGATTCAGATACAGACGTTTGAGAGTGAAGAGACTGGTGCTTCCCATTCTTTTGTGGAGAAGCTGATTAATGAAAGTCTTGCTAAGCTTGAGGAGGAAGAACTTGGTATGGACTATTTTGTAAGATGGGAACTTGGAGCTTGCTGGATGCAACATTTGCAAGACCAAAGTAATAATACAGAAAAAGATAAGAAACCATCCTTGGAGAAGGCTAAGAATGAGATGAAGGTCGAGGGTCTTGGGAAACCCCTTAAATCCCTTAAGAATTTTAAAAAGAAATCTGATTCAAGCAATACTACTTCTGCATCTGAATATTCAAAATTTAGTCGGGAGTCCCAAAGCCCTTCATTGCCCTCAATTGAATCGCAACATGAAACTACAGAAGCTGAGAATGAGCTTGTTCTGAAAAGGATGTTATCTGAGGAAGCTTTTACTCGATTTAAAGAATCAGGAACAGGACTTCACTGCAAGTCTATGCATGATTTGATTGACTTATCTCAAAAATATTACACAGACGTTGCACTCCCAAAATTGGTAGCAGATTTTGGCTCATTAGAACTCTCGCCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTAGGGGTCTAAGAATGCGTTCTCTTGGACATGTTGTCAAGCTTTCAGAAAAGCTTTCACATGTGCAGTCACTTTGTATTCATGAGATGATAGTTCGAGCTTTTAAGCACATCCTGCGGGCAGTAATTTCTTCTGTTAACAAGGAGAAAATGGCTTCATCAATTGCTGGTGCTTTGAATTTGCTGCTCGGTGTTCCTGGAAATAGAGATTCAGATAAATCACATGAAGTTCATCCCTTGGTGTGGAAATGGCTAGAGATGTTTTTGAAAAAGCGATTTGATTGGGATCTTCACAGGTTGAATTACAAAGATGTGAGGAAATTTGCAATTCTCCGTGGCTTGTGTCACAAGGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCTCCTATTCCCTTCCACAAATCTGATATTGTCAGCTTGGTCCCTGTTCACAAGCAAGCTGCATGCTCATCTGCAGATGGAAGGCAGCTCTTGGAGTCATCCAAAACTGCTTTGGACAAGGGAAAGCTTGAGGACGCTGTTACCTATGGCACAAAGGCTCTTGCTAAGCTAGTAGCAGTTTGCGGTCCCTACCATCGAATGACAGCAGGAGCATACAGCCTGCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATATATCAACAAAAAGCTTTGGATATCAACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTACAACACACAGAGCTGGCTCTGAAGTATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACTGCTGCTACTTACATTAATGTGGCTATGATGGAAGAAGGTCTGGGAAATGTGCATGTTGCTCTCAGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGCGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCATTGAGCGTGCAGCATGAGCAAACAACTTTGCAAATTCTGAGGTCAAAACTTGGTCCTGATGACTTGCGAACACAGGATGCTGCGGCTTGGCTGGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATTTGAGTGTGTCAGATTTGCTTGACTATATTAATCCTAATCATGATACTAAAGGGAGAGATGCAGCAACAAAGAGAAGAAGCCAGATAACAAAGGTGAGAGCGACATCCTACCTTAACCTTGGCATGTCAAGTTCTGATGAGTCTTCAAAAGAAATTCCCAAAGAGGCTTCAGATGAAGAGGTACAAATACCTGTAGCTGAAGGTAGTGCAGATTCTGAGCAGGAAAGCAACTCTGGACCTGACTCAGAACATACTATTTTAAAACAAATACCAGATGAAAAGCCGCAAATTTATGATGAAATATTGTCTGAAGCACATGCTGAAGGAGAAGATGGATGGCAACCAGTTCAAAGACCAAGATCAACTGGTTCATATGGCCGGAGACTGAAGCAGAGACGGGCAACACTTGGCAAAGTTTATAGTTATCAAAAGAATGTGGAAGTTGGCACAGAATCTCCTTTTGTAAGGAATGCTAGTCCAAATAGTAGGTATTATTTCTTGAAGAAGCGGCCAATTTCCCATGGGGGTTATACTGGTGATCATACAGTAAACATCACCCAAGGCCCTAAATTTGGAAGGAAAGTAGTTAAAGCTCTTACATACAGGGTCAAATCCATACCCTCAACTTCCAAGGCTAGTGCAAATGAGACGTTAGAAACAGGTGACAAGCTGTTTAGTTCTGTTTCAGAACCTGATCCAATTGATGTTAATCCAGTTAAGAATTCTATAGTTAGTCTTGGAAAGTCTCCTTCATACAAGGAAGTGGCCTTAGCACCTCCAGGGACAATCTCCAAGTTTCAGGTCTATAATCCTCCAAGTGAGATTTCTGTTAGCTGTGAACATGATGGTGGCAAACCTGAAGAGGAAGATATTGAAGCTAATAGAAATGTTAATCCAACCCCGGCAGAGGCAAATGATATGGATAAAGGCAAGAGTAATAATTCTGTTTCTAGTTCTGTTGATGGTTCACAGGATGATACTGGAGTTACTACTGAGGGGAAAGAGGAAACTCAGTTGATTGTTGCTGTGCAAGATAAATGTATGAATGCTGAGGGGAAATTAGGAGATGTTGAAGCTCAAGGAGCAATCGATAATAGCAGTTCGATTCAGGAAGTAGATGATCATGTGGATTCTTCCAAAAAAGAACTCGATGCAAGTAATTTAGCTGGCAGTTTGGAACCTAGTGATAATACAAATCCCATTTCCCAAGGTGGCAAGGATTTAAGGGTCGATGTGTCATCATCAAATCAGAGTCACACTGGGGGCATCCCGTATAAGAAATTGTCTGCATCTGCAGCTCCATTCAACCCATCGCCTACCATTGCACGTGCTCCATCAATTGCCATGAATATGACTCTTCCTTCTGGTCCCAGTGTAGTGCCTGGAATTGGCCCCTGGCCAGTAAACATGAATGTTCATCCTGGACCTACCACTGTGCTACCTGCAGTTACCCCCATGTGCTCCTCTCCTCACCATGCATATCCATCGCCTCCAACTACACCAAACATGATGCAACCACTGCCATATATGTATCCTCCTTATACTCAACCTCAATCAATGCCACCTGGCAGCTTTCCGGTCACTAGCAGTGCCTTTCATGCGAATCATTTTACATGGCAATGTAATTTGAACCCCACAGTATCTAAGTTTGGTCCCGGTGCTGTTTGGCCTGGTTGTCATCCTGTGGAATTTCCTCTTCCGTTACCTATTGTTGAACCAATCCCTGATCCCATTTCAGAGTCACAAGTTCCGTGTAATGGTTCTGAAAGTCCAAGTTCAGCTTCAGTTCTTCCTGAGGACATTGATAATATTGGTGATTCTAATCAATTGGTGAAAACTTTAGTATCAGACACTAGTGAAGATGAAGCAGTGAGAGCTGGTTCAGAAAGTGTAAAAGAAAATGGTGATATGAATTTACATGGGACTGAAAATTCTGGGAACGAGCAAAATCAAAACATTGGTTCTAATGGAAACTCTAGCAGTGGTGAAACAAACATGGATGGTGAGAAAACCTTCAGCATTTTGATTCGGGGGAGAAGAAATCGAAAGCAGACTCTAAGAATGCCAATAAGTTTGCTTACTCGACCTAATGGCTCACAGTCATTTAAGGTTATTTATAACCGCGTAGTTAGAGGAAGTCATGCTTCCAAGTCTATCAATCTCTCGTCTAGTAAAGATTGTACTGCTACTGCTTGA 5535 0.4307 MAPRNSRGKAKGEKKKKEEKVLPVVIDITVKLLDETHVLKGISTDRIIDVRRLLSVNTDTCYVTNFSLSHEVRGSRLKDTVDVSALKPCLLTLVEEEYNEERAVEHVRRLLDIVACTTSFGPSPPPPPKVAAGTVTKSGKSEVPPAKDAAVTVADVDGEISHSCPKLENFYEFFSLSHLTAPIQYVKKGSRRRVEEISEADYLFSLDVKVCNGKVVHVEACRKGFYSVGKQRILCHNLVDLLRQISRAFDNAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVAAQSPSSFPPLPVEDETWGGNGGSLGKDGTYDLIPWAKEFSLIASMPCKTAEERQVRDRKAFLLHSLFVDVSIFRAIGAVKHVMEEPNVSCSVVENNVVYTERVGDLSIKVLKNGSIASCKIDTKIDGVEATGVNQKDLIERNLLKGITADENTAAHDITTLGVINVRYCGYVVVVKVEGGVRENVVSPSQQIIELFDQPEGGANALNINSLRLLLHNTAPPENNKPMIQIQTFESEETGASHSFVEKLINESLAKLEEEELGMDYFVRWELGACWMQHLQDQSNNTEKDKKPSLEKAKNEMKVEGLGKPLKSLKNFKKKSDSSNTTSASEYSKFSRESQSPSLPSIESQHETTEAENELVLKRMLSEEAFTRFKESGTGLHCKSMHDLIDLSQKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISSVNKEKMASSIAGALNLLLGVPGNRDSDKSHEVHPLVWKWLEMFLKKRFDWDLHRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPIPFHKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRSKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAATKRRSQITKVRATSYLNLGMSSSDESSKEIPKEASDEEVQIPVAEGSADSEQESNSGPDSEHTILKQIPDEKPQIYDEILSEAHAEGEDGWQPVQRPRSTGSYGRRLKQRRATLGKVYSYQKNVEVGTESPFVRNASPNSRYYFLKKRPISHGGYTGDHTVNITQGPKFGRKVVKALTYRVKSIPSTSKASANETLETGDKLFSSVSEPDPIDVNPVKNSIVSLGKSPSYKEVALAPPGTISKFQVYNPPSEISVSCEHDGGKPEEEDIEANRNVNPTPAEANDMDKGKSNNSVSSSVDGSQDDTGVTTEGKEETQLIVAVQDKCMNAEGKLGDVEAQGAIDNSSSIQEVDDHVDSSKKELDASNLAGSLEPSDNTNPISQGGKDLRVDVSSSNQSHTGGIPYKKLSASAAPFNPSPTIARAPSIAMNMTLPSGPSVVPGIGPWPVNMNVHPGPTTVLPAVTPMCSSPHHAYPSPPTTPNMMQPLPYMYPPYTQPQSMPPGSFPVTSSAFHANHFTWQCNLNPTVSKFGPGAVWPGCHPVEFPLPLPIVEPIPDPISESQVPCNGSESPSSASVLPEDIDNIGDSNQLVKTLVSDTSEDEAVRAGSESVKENGDMNLHGTENSGNEQNQNIGSNGNSSSGETNMDGEKTFSILIRGRRNRKQTLRMPISLLTRPNGSQSFKVIYNRVVRGSHASKSINLSSSKDCTATA* 1845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1190 1844 SUPERFAMILY TPR-like 875 980 IPR011990 GO:0005515
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 603 634 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 566 640 - -
Pvu10g1190 1844 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1826 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1694 1710 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1503 1537 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1420 1440 - -
Pvu10g1190 1844 SMART tpr_5 993 1026 IPR019734 GO:0005515
Pvu10g1190 1844 SMART tpr_5 909 942 IPR019734 GO:0005515
Pvu10g1190 1844 SMART tpr_5 951 984 IPR019734 GO:0005515
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1688 1716 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1387 1448 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1729 1780 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1219 1240 - -
Pvu10g1190 1844 ProSiteProfiles Clueless (Clu) domain profile. 297 574 IPR025697 -
Pvu10g1190 1844 Pfam Translation initiation factor eIF3 subunit 135 697 838 IPR033646 -
Pvu10g1190 1844 Pfam Mitochondrial function, CLU-N-term 44 114 IPR028275 -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1471 1538 - -
Pvu10g1190 1844 Gene3D Tetratricopeptide repeat domain 869 981 IPR011990 GO:0005515
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1393 1407 - -
Pvu10g1190 1844 CDD CLU-central 699 839 IPR033646 -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1147 1174 - -
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 1748 1780 - -
Pvu10g1190 1844 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1826 IPR027523 GO:0006996
Pvu10g1190 1844 Pfam Tetratricopeptide repeat 992 1067 - -
Pvu10g1190 1844 Pfam Tetratricopeptide repeat 908 978 - -
Pvu10g1190 1844 ProSiteProfiles TPR repeat profile. 909 942 IPR019734 GO:0005515
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 122 143 - -
Pvu10g1190 1844 SUPERFAMILY TPR-like 946 1073 IPR011990 GO:0005515
Pvu10g1190 1844 MobiDBLite consensus disorder prediction 567 591 - -
Pvu10g1190 1844 Gene3D Tetratricopeptide repeat domain 982 1102 IPR011990 GO:0005515
Pvu10g1190 1844 SUPERFAMILY Hypothetical protein c14orf129, hspc210 184 265 IPR023231 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1190 Pvu-Chr10 37947883 37964691 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1190 K03255 - gmx:100808136 3101.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1190 10 37947883 37964691 Pvu10g1190 10 37947883 37964691 ECH
Pvu6g1185 6 22857636 22874113 Pvu10g1190 10 37947883 37964691 PCT