Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0553 ATGGATTCCCCACAATCTGTTGTGTCACCCTTCAGGAGCTCAGTTTTGGGTGAGGGTGAGAAGCACAAGTCTGAAGTTTTCTCGGGAAACTCTAGTCCCTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTGTCATGTCAAATGTAGATGAGTGTCTTGGAGTGCTTGATGTTTACATACATCAGGCCAGGGACATTCAGAACATTTGCATATACCACAAGCAAGATGTTTACGCTAGGATTTGCCTGACCAGTAATCCTGAGAACACTGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTTAATGAGAATCTTCAAGTCAATGTTGGAACTGTTGATGCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTGGAAGACCAGCTGCTTGGTTTTGCTTTGGTGCCTTTGTCTGAAGTTCTAGTCCAGAATGGGAAACTGGAGAAAGAGTACTCTCTTTCCTCAACCGATCTATTCCATTCTCCTTCGGGTTTTGTTCAGTTGACACTTTCTTACACTGGTGCTTCACCTGATGTTATGGCAATTTCTGCAATGCCAAGCAAGGTGGCCACAGATGCCCCTGTGCAGGATTCTGAAACATCCGAATCTCTGGCCCGGGATATGGACAAAATTGAGTTCCCGGATCCGAAGATTGCGAATGAAGACCACTTGATGGTTTCAGAATACTTTGGCATTCCATGTGAGGAGACTCAGTGCTCTGATAGCCTGGCTACTTCTGATGCCGAAAATCGTAGTTGTGAAGCCGGTGTTCGCCTTGTGGAAAGCTTCTCAGCATGCAGTGGTGAGTCTGTTCAGCCACCTAAGGTTGATTCCCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCCCCTTCCGTGCCTGCAAGCTCAGAATCATCTGATGCTGCTGCTTCTAAGTCTCCCGTTCAGGAGCAAGTTTCAGGCACCAAAAAGGACAAAAATGTGGATGCCAAAGATGGTGACAGTGATTCTTCTACTTGGGTTCCTGATGACTCATTCCCTAAGCCTGTTGTGTCTGTGAACATTGAGCCTGAGCCAAAGGTGGTGCAGCAGGATATAGTGGACATGTACATGAAAAGCATGCAGCAATTCACTGAGTCACTAGCAAAAATGAAGCTCCCTATGGACTTCGAAAATGAACCGACTAGTTCAGGAAATTCAACCACTGAGCAAAAGCTACAGCCTTCAAAGAGCAATAATTCCCGTGTGTTTTATGGTAGCAGAGCTTTCTTCTGA 1287 0.4584 MDSPQSVVSPFRSSVLGEGEKHKSEVFSGNSSPLSKDIEVNGKEVVMSNVDECLGVLDVYIHQARDIQNICIYHKQDVYARICLTSNPENTVSTKTINGGGRNPVFNENLQVNVGTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEYSLSSTDLFHSPSGFVQLTLSYTGASPDVMAISAMPSKVATDAPVQDSETSESLARDMDKIEFPDPKIANEDHLMVSEYFGIPCEETQCSDSLATSDAENRSCEAGVRLVESFSACSGESVQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKSPVQEQVSGTKKDKNVDAKDGDSDSSTWVPDDSFPKPVVSVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDFENEPTSSGNSTTEQKLQPSKSNNSRVFYGSRAFF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0553 428 MobiDBLite consensus disorder prediction 393 428 - -
Pvu6g0553 428 MobiDBLite consensus disorder prediction 277 325 - -
Pvu6g0553 428 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Pvu6g0553 428 Gene3D C2 domain 51 211 IPR035892 -
Pvu6g0553 428 Pfam C2 domain 55 162 IPR000008 -
Pvu6g0553 428 MobiDBLite consensus disorder prediction 326 342 - -
Pvu6g0553 428 CDD C2 57 163 - -
Pvu6g0553 428 MobiDBLite consensus disorder prediction 396 422 - -
Pvu6g0553 428 MobiDBLite consensus disorder prediction 277 356 - -
Pvu6g0553 428 SMART C2_3c 56 159 IPR000008 -
Pvu6g0553 428 PANTHER EXPRESSED PROTEIN 1 428 - -
Pvu6g0553 428 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 185 IPR035892 -
Pvu6g0553 428 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0553 Pvu-Chr6 16769473 16772078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0553 - - gmx:100796499 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0553 6 16769473 16772078 Pvu6g0553 6 16769473 16772078 ECH
Pvu6g0553 6 16769473 16772078 Pvu8g2836 8 58394493 58397428 PCT