Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0508 ATGGCACCCTCTATTATTTTCTCTTTGTTGTGCCTTCTGTTGGTTTCGACATGTGGTTATGTGCAACCCCTTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTGTTATGCTTCAGCTGCCAGAGATTGAGAATTCTGCCCAAGTTCCTCTTGTTGGAAATGCTAAAGTGGTTCTTTCTGACATCACAATTACGGATGTTCAAGTCAATTCTTCATCTGTTAAGACGGGAGAGAATGGAATTGTTCTTGTTGTTTCAGGTGCCATTGTTGATTTAAGTATGAGGTGGAGGTACACTGTCAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTTCAGTGAAGGTTACAGGTATGCAAGTGGGGCTTACCATAAATTTAAGGAACCAAGAAGGAACTCTGAGGTTGTCTCTCTTAGATTATGGATGTCATGTGGGAGACTTGTCTATAAAGTTAGACGGAGGTGCATCTTGGCTTTACCAACTGCTAGTAGATGCTTTTGAAGGGAATATAGCATCTGCCGTTGAAGAGGGCATTTCAGAGAAAATAAAAGAAGGGATAGAGAAGCTTGACAATTTTTTGGAATCTCTTCCAAAGAAGATCTCACTAGACAATTCTTCTACACTAAATGTTTCTTTTGTTGGAAATCCTGTGATGAGCAGTTCCTCCATTGCAATTGCAATTAATGGTTTATTCACAGGGAAAAAGGAAGTTTTACTACCTCAAGGTTACCACCACAAAAAATTGAAGATTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAGTGTGTTCAAATCTGCTTCCGAAGTTTACTTCAATGCAGGTAAAATGCAATTGATTGTTGATGAACTGCCTGATCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCCAATTATACAAGAGATATCCAAATGATGACATGCAGCTTAATATCTCTATATCTTCTCCACCAGTTATACAAGTGACATATCAAGATGTTGGTGCAACTATTCTTGTAGATATAACAATTGATGTTCTGGAAGATTTTGAAGTCATACCTGTTGCATGTATCTCAGTGGAAATTAGTGCTTCATGTGCTGTAGAAATTGTAGGAAATGACATTGTTGGTAGGCTCACATTACAGGAATTTTCTACATACTTGAAATGGAGCAAAATAGGGAAATTGCACATGCTTCTGATTAAGTCACTAATGTCAAGTGTCCTCAAAACTGTTGTCCTTCCATACTTGAACTTCAAATTAAAGAGAGGATTCCCATTACCAATTATTGATGGTTATGGTTTTCAGAATGCTAAAATCTTGTACAACCATCCATGGATTGCAGTGTGTAGTGATGTTTCCTTAGAAGATTACTATTTAGATCCACAATCAACTTTAGCTTATGTTTCATAA 1485 0.3798 MAPSIIFSLLCLLLVSTCGYVQPLEEGFISGVISDKGLEYAKELLIEKGIASIVMLQLPEIENSAQVPLVGNAKVVLSDITITDVQVNSSSVKTGENGIVLVVSGAIVDLSMRWRYTVSSWLIPIGISDKGTASVKVTGMQVGLTINLRNQEGTLRLSLLDYGCHVGDLSIKLDGGASWLYQLLVDAFEGNIASAVEEGISEKIKEGIEKLDNFLESLPKKISLDNSSTLNVSFVGNPVMSSSSIAIAINGLFTGKKEVLLPQGYHHKKLKISSACGGLPKMIKVSIHESVFKSASEVYFNAGKMQLIVDELPDQAILNTAEWRFIVPQLYKRYPNDDMQLNISISSPPVIQVTYQDVGATILVDITIDVLEDFEVIPVACISVEISASCAVEIVGNDIVGRLTLQEFSTYLKWSKIGKLHMLLIKSLMSSVLKTVVLPYLNFKLKRGFPLPIIDGYGFQNAKILYNHPWIAVCSDVSLEDYYLDPQSTLAYVS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0508 494 PIRSF Lipid_binding_protein 6 482 IPR030675 GO:0005615|GO:0008289
Pvu6g0508 494 Pfam LBP / BPI / CETP family, N-terminal domain 37 211 IPR017942 GO:0008289
Pvu6g0508 494 PANTHER OS06G0309200 PROTEIN 1 493 IPR045897 -
Pvu6g0508 494 SMART bpi1_3 33 258 IPR017942 GO:0008289
Pvu6g0508 494 Gene3D - 32 465 - -
Pvu6g0508 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 479 IPR017943 GO:0008289
Pvu6g0508 494 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 493 - -
Pvu6g0508 494 Pfam LBP / BPI / CETP family, C-terminal domain 280 466 IPR001124 GO:0008289
Pvu6g0508 494 Gene3D - 36 216 - -
Pvu6g0508 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Pvu6g0508 494 SMART bpi2_2 277 475 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0508 Pvu-Chr6 16362770 16370520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0508 K05399 - gmx:100815362 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0508 6 16362770 16370520 Pvu6g0508 6 16362770 16370520 ECH
Pvu6g0508 6 16362770 16370520 Pvu8g2818 8 58249479 58253854 PCT