Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1862 ATGTCATCTCTCAGTAGGGAGTTGGTGTTCTTAATCCTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAACAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAACGGTAATTGGGATGAGGTTGAGAGATACCTATCTGGTTTCACCAAAGTAGATGACAATAGGTATTCTATGAAGATTTTTTTTGAGATAAGGAAGCAGAAGTACCTGGAGGCATTGGATAAGCATGATCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCCACATTTAATGAAGAACTGTTTAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAGCAGTTGTCCAAGTATGGTGATACGAAGTCTGCAAGGGCAATCATGTTGGTTGAACTCAAGAAATTGATTGAGGCCAATCCCTTGTTTCGCGATAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGTAAGAATCCGCGGCCAAATCCAGATATAAAAACACTTTTTGTGGATCACTCGTGTGGACAACCAAATGGTGCACGGGCTCCATCCCCTGCTAGCAATCCACTTCTAGGATCATTACCAAAGGCTGGAGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTTCAACCTACTCCAGCACCGGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCAACAACTGTAGCACATCCTGCAGTCTCTGGTGGAGCTATAGGTCTTGGTGCACCATCAATCCCTGCTGCTTTGAAGCACCCTAGGACCCCTCCAACTAATCCTTCTGTTGACTATCCGTCTGGTGATTCAGATCATGTTTCTAAGAGAACGAGACCAATGGGAATATCAGATGAGGTAAATCTGCCTGTCAATGTTCTGTCAGCTACATTCCCTGGTCATGGTCATGGTCAGGCTTTTAATGCGCCTGACGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGACACTGCTTCTTGTTGGCACGAATGTGGGGGACATTGCTTTGTGGGAAGTGGGCTCTAGGGAGCGGTTGCTCATGAGGAACTTTAAAGTGTGGGATCTTAGTGCTTGTTCAATGCCCTTTCAGGCTGCTCTTGTCAAAGATCCAGGCGTTTCTGTCAACCGTGTTATTTGGAGTCCTGATGGGGCTTTATTCGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAGCTAGACAGCATTTGGAGATTGATGCTCATGTCGGTGGAGTAAATGATCTAGCATTTTCCCACCCCAATAAGCAGTTATGTGTCATTACCTGTGGTGACGATAAGACCATTAAGGTTTGGGATGCTGCTTCGGGTGCAAAACAGTATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGTCCGCATTATAAAGAAAACATTCAGTTCATCTTTTCCACAGCATTAGATGGAAAGATAAAAGCATGGCTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCCCCTGGTCGTTGGTGTACAACCATGGCCTACAGTGCTGATGGTACAAGACTTTTTTCATGTGGGACAAGTAAGGAGGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGCAAAAGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGATATTTGGCTGCAGGTGATGATTTCTCCATTAAATTCTGGGACATGGACAATATTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGCATCCGTTTTAACAAGGATGGAGCTCTTTTAGCTGTTTCTGCAAATGAAAATGGAATCAAAATCTTAGCCAATGGAGATGGTATTCGTTTGTTACGTACTTTAGAGAATTCTTTATATGATACATCTAGAACGTCAGAAGCCATGACAAAGCCTGCAATAAATCCAATTTCAGCCGCCGCCGCCGCTGCAGCAACTAGTGCTGCACTTGCAGAGAGGGCTTCATCTGTCGCGATTACTGCGATGAATGGGGATGCTCGAAACATGGGTGATGTTAAACCTAGAATTAGTGAAGAATCCAATGACAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACAATCTCAATGTAGATCCTTGAAGCTACCTGAGAATGTTAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCTATTCTAGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAGTGACCGTAATTCAACTGGCAAGGCCTCTGCTACTGTGCAGCCCCAGTTGTGGCAACCTTCTAGTGGCATTCTGATGACCAATGACCTTACTGATAGCAATACTGAGGATGCCGTTCCCTGCTTTGCTCTGTCAAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTTAAGACAATGACAACATTCATGCCTCCACCACCTGCCGCAACTTTTCTTGCTTTCCATCCTCAGGATAATAATATTATTGCTATAGGCATGGATGATTCTTCCATTCAAATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGTCTTGCTTTTTCTCATGTATTGAATGTGCTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGACGGATGGGAAAAGCAGAAATCTAGATTCTTGCAACTTCCAGCCGGCAGAACTCCACCAGCTCAGGCAGATACCCGTGTACAGTTTCATCAGGATCAGATCCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAATGTTTGAAGCAGTGGTTCCCGCGAGAATCAGCAGCCCCAGTATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCGACAGTGTGTGTATTTAGTGCTTCAAACCTTAGATTACGTTGTCGAATCAATCCTTCTGCTTATCTTTCTGCCAGTGTCAGTTCTAATGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAATCAGTTTGCTGTAGGATTGTCTGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGCAAATGGGGTGTGCCTCCACCCAATGAGAATGGATCAACAAGCAATATGGCAGCTACTTCAGTTGGAGCTTCTTCAGATGAAGCTCAGAGATGA 3399 0.4316 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPASNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGISDEVNLPVNVLSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEARQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANENGIKILANGDGIRLLRTLENSLYDTSRTSEAMTKPAINPISAAAAAAATSAALAERASSVAITAMNGDARNMGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSTGKASATVQPQLWQPSSGILMTNDLTDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRESAAPVSHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPSAYLSASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSTSNMAATSVGASSDEAQR* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1862 1132 MobiDBLite consensus disorder prediction 1109 1132 - -
Pvu5g1862 1132 MobiDBLite consensus disorder prediction 283 305 - -
Pvu5g1862 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 477 491 IPR019775 -
Pvu5g1862 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 960 IPR001680 GO:0005515
Pvu5g1862 1132 SMART Lish 4 36 IPR006594 GO:0005515
Pvu5g1862 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pvu5g1862 1132 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 521 1101 IPR011047 -
Pvu5g1862 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1132 IPR027728 GO:0006355
Pvu5g1862 1132 SMART WD40_4 830 866 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 537 580 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 869 909 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 343 382 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 912 951 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 449 490 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 1057 1096 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 583 623 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 1003 1044 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 493 534 IPR001680 GO:0005515
Pvu5g1862 1132 SMART WD40_4 404 443 IPR001680 GO:0005515
Pvu5g1862 1132 SMART ctlh 34 92 IPR006595 -
Pvu5g1862 1132 Pfam WD domain, G-beta repeat 456 490 IPR001680 GO:0005515
Pvu5g1862 1132 Pfam WD domain, G-beta repeat 918 951 IPR001680 GO:0005515
Pvu5g1862 1132 MobiDBLite consensus disorder prediction 206 229 - -
Pvu5g1862 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 919 951 - -
Pvu5g1862 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 499 IPR001680 GO:0005515
Pvu5g1862 1132 PANTHER TOPLESS-LIKE PROTEIN 1 1132 - -
Pvu5g1862 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pvu5g1862 1132 Gene3D - 322 543 IPR015943 GO:0005515
Pvu5g1862 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 632 IPR001680 GO:0005515
Pvu5g1862 1132 Gene3D - 544 693 IPR015943 GO:0005515
Pvu5g1862 1132 SUPERFAMILY WD40 repeat-like 354 665 IPR036322 GO:0005515
Pvu5g1862 1132 MobiDBLite consensus disorder prediction 1099 1132 - -
Pvu5g1862 1132 Gene3D - 804 1097 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1862 Pvu-Chr5 40191119 40200106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1862 454 667 Miscellaneous Gene Families AT5G08390 23.288 1.07e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1862 - - gmx:100790282 2190.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1635 10 42609486 42617478 Pvu5g1862 5 40191119 40200106 ECH
Pvu5g1862 5 40191119 40200106 Pvu5g1862 5 40191119 40200106 ECH
Pvu10g1635 10 42609486 42617478 Pvu5g1862 5 40191119 40200106 PCT