Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1635 ATGTCGTCTCTTAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACTGTACACAAGCTTGAGCAGGAATCCGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAACGGGAATTGGGACGAGGTGGAGAAATACCTCTCCGGTTTCACCAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCTAAGGCAGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTGACGTTGGAAAACTTTAGGGAGAATGAACAATTGTCTAAGTACGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATCGAAGCAAATCCTTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTGCGGACTTTAATCAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCTGATATAAAAACACTTTTTGTGGATCATTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAACCCGTTACTAGGTGCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAACCTACGCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCGAATCCTACCACTGTAGCACATGCCGCGGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCTATGCCTGCTGCTTTGAAGCATCCTAGGACCCCTCCAACTAATCCTTCTGACTATCCATCTGGAGACTCAGAGCATGTTGCTAAGAGAACAAGGCCAATTGGAATTTCAGATGAGGTGAATCTACCTGTCAATGTGTTATCAGCAACATTCCCAGGTCATGGTCAACATAGTCAAGCATTTAATGCACCTGATGACATACCTAAGGCTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGCTTGGTCTCAAGGAACTTCAAAGTGTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTTAAAGATCCGGGTGTTTCTGTCAACCGCGTGATTTGGAGTCCTGACGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCAAGGTGGGGATGAAATACGACATCACTTGGAGATTGATGCTCATGTTGGTGGAGTGAATGATCTAGCATTTTCCCACCCAAATAAACAACTATGCGTGATAACTTGTGGTGATGATAAGACCATCAGGGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACATTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATCATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGCTATATGACAATTTGGGATCTCGTGTTGATTATGAGGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGCGGGACAAGCAAAGATGGAGAATCCTCTATTGTTGAGTGGAATGAGAGTGAAGGGGCTGTGAAAAGGACTTATCAAGGATTTCGTAAGCGATCTTTGGGTGTTGTGCAATTTGATACCACCAAAAATCGATTTTTGGCAGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGTATTCGTTTCAACAAGGATGGAACACTTTTAGCTGTGTCTGCAAATGAGAATGGAATCAAAATTTTAGCCAATGGGGATGGTATTCGTTTGTTGCGCACACTAGAGAATTCATTATATGATGCTTCAAGGGCATCAGAAGCCTTGACAAAGCCTACAATTAATCCAATTTCTGCCGCCGCTGCCGCCGCTGCCGCCGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACATGGGTGATGTTAAACCCAGAATAAGCGAAGAATCAAATGACAAATCAAAGGTATGGAAGCTCACTGAAATAAATGAACAATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTAAGAGTAACTAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCGTTAGCATCAAATGCCATTCACCTGCTGTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAACCGCAGTTGTGGCAACCATCTAGTGGCATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCATTGTCCAAAAATGACTCATACGTAATGTCGGCATCAGGAGGGAAGATATCTCTGTTCAATATGATGACTTTTAAGACTATGACAACATTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAATAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAACACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCCGGGAGGACACCACCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCCTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTGTCCGCGAGATTCATCTGCACCAATATCGCATGCAACATTCTCCTGTGATAGCCAGCTTATATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCTGCAAGTGTCAGTTCCAACGTACAACCACTTGTAATTGCGGCTCACCCACAAGAGCCAAATCAGTTTGCTGTAGGACTGTCGGATGGTGGAGTTCATGTTTTTGAACCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCAGCAAGCAATGTGGCAGCTACTTCTGTCGGACCTTCTTCAGATCAAGCTCAAAGATGA 3414 0.4344 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSDYPSGDSEHVAKRTRPIGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYQGGDEIRHHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIRVWDAASGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYDASRASEALTKPTINPISAAAAAAAAAATSAALAERASSVVAIAGMNGDTRNMGDVKPRISEESNDKSKVWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWCPRDSSAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1635 1137 Gene3D - 778 1109 IPR015943 GO:0005515
Pvu10g1635 1137 SMART WD40_4 874 914 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 538 581 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 1062 1101 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 834 871 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 344 383 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 450 491 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 584 624 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 917 956 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 405 444 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 494 535 IPR001680 GO:0005515
Pvu10g1635 1137 SMART WD40_4 1010 1049 IPR001680 GO:0005515
Pvu10g1635 1137 Gene3D - 546 694 IPR015943 GO:0005515
Pvu10g1635 1137 SMART Lish 4 36 IPR006594 GO:0005515
Pvu10g1635 1137 MobiDBLite consensus disorder prediction 283 302 - -
Pvu10g1635 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 965 IPR001680 GO:0005515
Pvu10g1635 1137 Gene3D - 315 545 IPR015943 GO:0005515
Pvu10g1635 1137 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pvu10g1635 1137 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pvu10g1635 1137 Pfam WD domain, G-beta repeat 453 491 IPR001680 GO:0005515
Pvu10g1635 1137 Pfam WD domain, G-beta repeat 923 956 IPR001680 GO:0005515
Pvu10g1635 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Pvu10g1635 1137 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1137 IPR027728 GO:0006355
Pvu10g1635 1137 MobiDBLite consensus disorder prediction 1119 1137 - -
Pvu10g1635 1137 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 422 961 IPR011047 -
Pvu10g1635 1137 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 924 956 - -
Pvu10g1635 1137 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Pvu10g1635 1137 SUPERFAMILY Nucleoporin domain 983 1112 - -
Pvu10g1635 1137 SUPERFAMILY Putative isomerase YbhE 347 452 - -
Pvu10g1635 1137 MobiDBLite consensus disorder prediction 1108 1137 - -
Pvu10g1635 1137 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 633 IPR001680 GO:0005515
Pvu10g1635 1137 SMART ctlh 34 92 IPR006595 -
Pvu10g1635 1137 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1635 Pvu-Chr10 42609486 42617478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1635 455 668 Miscellaneous Gene Families AT5G08390 23.744 1.52e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1635 - - gmx:100795759 2198.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1635 10 42609486 42617478 Pvu5g1862 5 40191119 40200106 ECH
Pvu10g1635 10 42609486 42617478 Pvu10g1635 10 42609486 42617478 ECH
Pvu10g1635 10 42609486 42617478 Pvu5g1862 5 40191119 40200106 PCT