Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1852 ATGGCAGGTGTTAGTGGTCACGAAACACATCAAAATAATAGGAGGAGAAAGAAATCTACTGTCTGGGAGCACTTCACAGTGAAAACTGATGGACCTGGATGTGCCAGGGCTTACTGCAAAAGATGCCAGAAATCATTTGCTTATCTCAAACATTCAAAACAATCTGGCACCAGTCATCTCAAGAGACACATTGCTCTGGGAATCTGTCAGAAAAATAAAAAAATCCCATGTTCCAATACTGATGCAGATCCACCTAAGAAAAGAGCAAGGGCAAAACCTTACATTGCTGCTATCTCATTTGATCAGGAGTGTTGCAACAGTAAGATTGCTAAAATGATTATTTTACACGACTATCCACTTCATATTGTAGAACACCAAGGTTTCATTGATTTTGTAAAGGCACTACAACCCCAGTTCAATCCACTAAGCTTTAAGGCTATTCAAGGGGATTGTGTTGCTATGTACATCAGAGAGAAGCAAAAGCTATTGAAACTTATTGATGGGATTCCTGGACGAGTCAACCTCACCTTGGACGTATGGACTTCAAACCAAACATCAGCCTATGTTTTTCTCCGAGGTCACTTTATTGATGGTGATTGGAACTTACACCATCCTATTCTTAATGTATTCACGGTACCATTTCCTGATTCTGCTGGTTCCTTAAATCAAACTGTAATTAAATGCCTGAGCAATTGGCATTTAAAGGGTCGGTTATTTACTCTTGCACTTGATAAATTCTTCTCCACTGAGACTTTGATAGGAAATCTGAGAAGTCTCCTTTCTGTTAATAACCCTGTGATTCTCGATGGTCAATTTTTAAGCCAGAACTGTTATGCTCGTGTACTTAGTCACCTTGCATTGGATGTGCTATCTACTATGAGAGAAACTATTGATAAAGTTCGTGAGAGTGTGAAGTATGTGAAATCTTCTAAATCTAATGAAGCAAATTTTTTGAAGCTGAGGCAACAACTTCAAGTCCCCACTACAATGGACCTTGTTATTGATGACAAAAATAAATGGGACACAATCTACCACATGCTTGTTGCTGCATGCAAATTAAAGGAAGCTTTTGTTTGCTTTGATGCCTTTGATCCTGATTTCAGACTGACTTTAACACTGGATGACTGGAAGCAGGTGGAAACTCTGTGTAGATATTTGAATTACTTGTATGATGCAGCTAACATTTTAACAGTTCAACCATACCCAACTGCAAATTTGTTTTTCCTTGAAGTGTCAAAACTTCAGCTGGTGTTGACTTGTGCATCCTTAAGCCATGATCCTTTCTGCAGTCGTTTGATTATGCCTCTGCAAAAGAAGTTTGATCAGTATTGGAGAGAAAGCTGCTTCATATTGGCTGTTGCTGTAGCCATGGATCCAAGATATAAAATGAAATTCGTGGAATCCACCTTTGGTAAGATATTTGGTGAGAATGCTGAGTACTGGATAAGAGTGGTTGAGGATGGTCTTAATGAACTGTTCCTTGACTATAATATCATAGAAGTGCTTCCTTTCACAGCAAGAAGTGACAATGAAGGGGATGAGACTATGATAAAGACTGAGTCATTTGATGAAGCGGGATTTGATGGATCTCTTTTTGCGGCTGATGATGGACTCTCTGATATTGAATTTTATATATCTGATCTAACATGTAATCAGCAATTTAAGTCCGAATTGGATGAGTATCTTGAAGAGCCTCTAGAGTCCAGAGTACAAGAATTTGATGTTCTGAGCTGGTGGAGGATAAACCGATTGAAGTACCCAACATTGTCTAGACTAGCATCAGATATTTTGTGTGTGCCAGTATCCACCCTCTCTGCAGATGCTGTTTTTGATACACAAATAAGAAAAATGGACAACTACCGGAGTTCATTAGACTCCTTGACTCTTGAGGCCCTTATTTGTTCCAAGGACTGGTTCCAGTATAAATCATTACCCATCACTGTTCCAAATACACTTGTCAAAGTTGAGTGTTAG 1974 0.3901 MAGVSGHETHQNNRRRKKSTVWEHFTVKTDGPGCARAYCKRCQKSFAYLKHSKQSGTSHLKRHIALGICQKNKKIPCSNTDADPPKKRARAKPYIAAISFDQECCNSKIAKMIILHDYPLHIVEHQGFIDFVKALQPQFNPLSFKAIQGDCVAMYIREKQKLLKLIDGIPGRVNLTLDVWTSNQTSAYVFLRGHFIDGDWNLHHPILNVFTVPFPDSAGSLNQTVIKCLSNWHLKGRLFTLALDKFFSTETLIGNLRSLLSVNNPVILDGQFLSQNCYARVLSHLALDVLSTMRETIDKVRESVKYVKSSKSNEANFLKLRQQLQVPTTMDLVIDDKNKWDTIYHMLVAACKLKEAFVCFDAFDPDFRLTLTLDDWKQVETLCRYLNYLYDAANILTVQPYPTANLFFLEVSKLQLVLTCASLSHDPFCSRLIMPLQKKFDQYWRESCFILAVAVAMDPRYKMKFVESTFGKIFGENAEYWIRVVEDGLNELFLDYNIIEVLPFTARSDNEGDETMIKTESFDEAGFDGSLFAADDGLSDIEFYISDLTCNQQFKSELDEYLEEPLESRVQEFDVLSWWRINRLKYPTLSRLASDILCVPVSTLSADAVFDTQIRKMDNYRSSLDSLTLEALICSKDWFQYKSLPITVPNTLVKVEC* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1852 657 SUPERFAMILY Ribonuclease H-like 160 641 IPR012337 -
Pvu5g1852 657 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 7 645 - -
Pvu5g1852 657 MobiDBLite consensus disorder prediction 1 20 - -
Pvu5g1852 657 SUPERFAMILY beta-beta-alpha zinc fingers 19 66 IPR036236 -
Pvu5g1852 657 SMART bed5 16 72 - -
Pvu5g1852 657 Pfam hAT family C-terminal dimerisation region 557 639 IPR008906 GO:0046983
Pvu5g1852 657 Pfam Domain of unknown function (DUF4413) 399 496 IPR025525 GO:0003677
Pvu5g1852 657 ProSiteProfiles Zinc finger BED-type profile. 16 79 IPR003656 GO:0003677
Pvu5g1852 657 PANTHER BED FINGER-RELATED 7 645 IPR045259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1852 Pvu-Chr5 40136239 40139218 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1852 - - gmx:106796308 1146.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1852 5 40136239 40139218 Pvu5g1852 5 40136239 40139218 ECH
Pvu5g1852 5 40136239 40139218 Pvu10g1627 10 42523954 42528950 PCT