Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1847 ATGTCTGCTGCGGTGTGCGGAACCAAGAGATCTTTGTTCGAAGAGCTTCCTCCTTCTCCGCCAGTTTCCAAGAGGCTCCGCTGTTCCTCTTCCCCAATTCGCCTCTCTCTCCCTTCCCTCGTCGATCACCTTCGCCCTCTCTTCCCTCATATGGATGATCAGATCCTCGAGAAAGCCCTTCAAGAATGCGGTAATGACCTAGATGCTGCCATCAAGAGCCTCCACGGCCTCCATTTGGGATCTGCCGATGATAATTCTCAGACTGCTCCTCAACCCCACGCTAGCGTCGTCCACACAGGTGCTTTGGAAGAGAATGGGGATGCTGCTGCATCTGCTTCTGGGGATCAGCCGGCGGACAACTTTCCTGCCGATGGAGCAGAGTGGATTGACTTGTTTGTTAGAGAGATGACGTGTGCTACCAGCGTTGATGATGCCAGAGCTCGTGCTGCTAGATTACTGGAGGTTTTAGAGAAATCTATTAGTGCACATGCCAGTTCTGGGGCAACAACTGCCCTTCAAAGGGAGAATTTGATGCTGAAGGAGCAAATTGAAGCCTTGACCAAGGAGAAAAATTGTTTTAAAAGTGCATTTAGAATCCAGCTTGAACGTCTTTCCGATTACGAGAATAAAAACCAAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAATATCAGGAGCAGATCAGAACTCTTGAGGTCAATAACTATGCTTTGCGAATGCATTTGAATCAGGCACAACAGTACAACTCTTTTCCTGGGCGTTTCCCTCCTGATGCCTTCTAG 783 0.4904 MSAAVCGTKRSLFEELPPSPPVSKRLRCSSSPIRLSLPSLVDHLRPLFPHMDDQILEKALQECGNDLDAAIKSLHGLHLGSADDNSQTAPQPHASVVHTGALEENGDAAASASGDQPADNFPADGAEWIDLFVREMTCATSVDDARARAARLLEVLEKSISAHASSGATTALQRENLMLKEQIEALTKEKNCFKSAFRIQLERLSDYENKNQELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQQYNSFPGRFPPDAF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1847 260 Pfam CUE domain 39 73 IPR003892 GO:0043130
Pvu5g1847 260 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 260 - -
Pvu5g1847 260 ProSiteProfiles CUE domain profile. 36 78 IPR003892 GO:0043130
Pvu5g1847 260 Coils Coil 197 234 - -
Pvu5g1847 260 SUPERFAMILY UBA-like 37 82 IPR009060 GO:0005515
Pvu5g1847 260 CDD CUE 39 74 - -
Pvu5g1847 260 Coils Coil 169 189 - -
Pvu5g1847 260 Gene3D - 38 80 - -
Pvu5g1847 260 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1847 Pvu-Chr5 40107021 40109420 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1847 - - gmx:100815998 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1847 5 40107021 40109420 Pvu5g1847 5 40107021 40109420 ECH
Pvu5g1847 5 40107021 40109420 Pvu10g1624 10 42501791 42505542 PCT