Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1794 ATGAAGAAGCAGTGTTGTGAAGAATCAGAGAGAACTGTTGGATCCTGCGAATGTTGGTTGGATGATGCATGCATCGTTGACATGGATTGCTTTGTGAAGACCCTTTCAAGCATCAAACAGAAGGGTATTCGTGCAGACTTGATCGGTTCCATCATCACTCATTATGCTTCCATTTGGCTCCCTGACCTCTCTGAGCATGGTGTCACCACTCAATTCCAATCCCCCCAAAGCATCACCAATTCATGGATGAAGAAGAGGTTCTTTGTGGAGACCTTGGTCAATGTTCTGCCTCCTGAGAAGGATTCTGTGCCATGCAACTTCCTCCTTCGCCTTCTCAGAACCGCCATCATGGTTCGGGTTGATGCTGCTTACAGAGCTGAGATTGAGAACCGCATTTCCTCGCAGCTAGATCAAGCTTCTCTCAAAGAGCTCATGATACCCTCCTTCAGCCACACCTGTGGAACTCTCTTGGATGTTGAGCTTGTTCTCAGGTTGGTGAAGACGTTTTTGAGCATGGACCGCGACGGTGCTGCTCTGGTTAAGGTGGCCAAGTTGGTGGATTGCTACCTTGCTGAGGCTGCTGTGGATGCCGGTTTGTCCTTGTCTGAGTTTCGTGCACTTGCTGGAGTTCTTCCAAGCCATGCAAGAGCCTCAGATGATGGCTTGTACAGAGCCATTGACACTTATCTAAAAGCACATCAAGGTGTGTCAAAGCAAGAAAGGAAGGGCCTGTGCAGACTTCTTGATAGCAGGAAACTGACACCAGAGGCCTCACTTCATGCAGCTCAAAATGAAAGGTTGCCTGTGAGAGCTGTGATTCAGGTGCTGTTCTCTGAACAAGCCAAACTCAACCGCCAAGTAGATTGGAGTGGCTCCTTCAGCTTGAGGAGCCCAAATGGAGGCCTTGACCCACTGGGACGCTGCCTTTCAAAGAGAGAAATGAATGCTCAGCAGCTGGAGATAAGGAAGCTGAAGGAAGATGTTAACAGGCTGCAAAACCAGCTGAATGCCATGAAAGTGCAGATGGAGAAGAAGAAGGGCTTATTCAAATGGTAG 1056 0.4867 MKKQCCEESERTVGSCECWLDDACIVDMDCFVKTLSSIKQKGIRADLIGSIITHYASIWLPDLSEHGVTTQFQSPQSITNSWMKKRFFVETLVNVLPPEKDSVPCNFLLRLLRTAIMVRVDAAYRAEIENRISSQLDQASLKELMIPSFSHTCGTLLDVELVLRLVKTFLSMDRDGAALVKVAKLVDCYLAEAAVDAGLSLSEFRALAGVLPSHARASDDGLYRAIDTYLKAHQGVSKQERKGLCRLLDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQAKLNRQVDWSGSFSLRSPNGGLDPLGRCLSKREMNAQQLEIRKLKEDVNRLQNQLNAMKVQMEKKKGLFKW* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1794 351 Coils Coil 314 348 - -
Pvu5g1794 351 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 15 351 - -
Pvu5g1794 351 PANTHER OS12G0117600 PROTEIN 15 351 IPR043454 -
Pvu5g1794 351 Pfam NPH3 family 18 258 IPR027356 -
Pvu5g1794 351 ProSiteProfiles NPH3 domain profile. 17 282 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1794 Pvu-Chr5 39731428 39734504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1794 11 345 EF-hand Containing Proteins AT3G44820 30.026 1.29e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1794 - - pvu:PHAVU_005G173900g 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1794 5 39731428 39734504 Pvu5g1794 5 39731428 39734504 ECH
Pvu5g1794 5 39731428 39734504 Pvu10g1586 10 42251281 42253931 PCT