Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1586 ATGCCCGAGACAGCTACCACACCAACCGATTCCTCCTCTACTAGTCTATTTGAGCTTCTCACCGAAATGAAGAAGCAATCTTGTCCAGAATCACTCACCTTACAAGCAAAATCACCCTCCCAATACTCCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTGAAGACCCTTTCTGGCATCAAGGCCAAAGGTGTTCGTGCAGATCTTATTGGCTCCATCATCACACACTATGCCTCCAAATGGCTCCCTGATCTTTCTGCAGGTGATATGGTGGAAAAGGGTCTCACCCAATTCGAGGAATCACAGGAAAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAAGATGCAATTCCATGCAACTTTCTGCTTAGGCTTCTGAGAACAGCCAACATGGTTGGGGTTGAGGGTACCTACAGGCAAGAGCTTGAGAACCGTATTTCGTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGGTGATTCCATCTTTCAGCCACACTTGTGGCACTCTCTTGGATGTTGAGCTTGTCATTAGGCTGGTTCAGAGGTTCGTGAGTTTGGACAGTGAGGGAGCTAAGAGCGTTGCTTCTATGATTAAGGTGGCTAAGCTAGTTGATTCCTACCTCGCTGAGGCTGCTGTGGACGCCAATTTGAGCTTGAACGACTTCGTTACCCTTGCTGCTGCTCTTCCTAGCCATTCAAGAGCAACGGATGATGGCTTGTACCGAGCCATTGATACCTATCTTAAAGCACACCCAGCAGTGTCAAAGCAAGAAAGGAAGGGTCTTTGCAGGTTAATCGACAGCAGAAAACTGACCCCAGAAGCATCACTCCACGCAGCACAAAACGAACGATTTCCAGTGAGAGCAGTGATTCAGGTGCTGCTTTCCGAGCAGAGCAAACTGACACGCCACGTGGATTGGAGCGGTTCCTTGGTGAGTGGGACAAGAAGCCCCAGTGCGTTGGACTTGCCAACACGGTGTCTCTCCAAGCGCGAGGTGAACGCGCAACAGCACGAGATAAGGAAGCTGAAGGACGACGTGTACAGGTTGCAGAGCCAGTGCAACGCCATGCAGGCACAGATGGAGAGAATGGTGGAGAAGAAGAAGGGGTTCTTCAAGTGGAAGAAGTTTGCTTTTAGCAAAGCTGAACATGATAAAATGGAACAAGTGCTTGAAGGGAATGGAATGCACACGCCTGCGGGTCTGAAAACCAGATTGGTGAATGCAAAAGGTAGCAAGAACAACAATGCTCACAAGTGGAGGAAATCCATGTCGTGA 1335 0.4951 MPETATTPTDSSSTSLFELLTEMKKQSCPESLTLQAKSPSQYSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMVEKGLTQFEESQESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGTYRQELENRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVQRFVSLDSEGAKSVASMIKVAKLVDSYLAEAAVDANLSLNDFVTLAAALPSHSRATDDGLYRAIDTYLKAHPAVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLTRHVDWSGSLVSGTRSPSALDLPTRCLSKREVNAQQHEIRKLKDDVYRLQSQCNAMQAQMERMVEKKKGFFKWKKFAFSKAEHDKMEQVLEGNGMHTPAGLKTRLVNAKGSKNNNAHKWRKSMS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1586 444 Coils Coil 352 379 - -
Pvu10g1586 444 Pfam NPH3 family 46 295 IPR027356 -
Pvu10g1586 444 PANTHER OS12G0117600 PROTEIN 5 444 IPR043454 -
Pvu10g1586 444 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 5 444 - -
Pvu10g1586 444 ProSiteProfiles NPH3 domain profile. 45 319 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1586 Pvu-Chr10 42251281 42253931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1586 44 388 EF-hand Containing Proteins AT3G44820 32.891 3.46e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1586 - - gmx:100793820 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1586 10 42251281 42253931 Pvu10g1586 10 42251281 42253931 ECH
Pvu5g1794 5 39731428 39734504 Pvu10g1586 10 42251281 42253931 PCT