Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1782 ATGGGTGCTTCTCTTCCTCCCAAAGAGGCCAACCTCTTGAAGCTTATCGTTAAATCTTATGAAACCAAACAATACAAGAAGGGCCTCAAAGCAGCAGATACTATTCTGAAAAAATTCCCAGACCATGGAGAAACCTTATCAATGAAGGGGTTGACGTTGAATTGCATGGATCGCAAGTCTGATGCATATGAATTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTGTATCGGTCAGACAGAGAATATAGGGAGGCGATAAAGTGCTATCGGAATGCATTGAAAATAGATCCTGACAATATTGAAATATTGCGGGACTTGTCACTTTTACAGGCTCAAATGCGAGATTTAACCGGCTTTGTTGAGACACGGCAACAACTTCTGACACTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTGAACTCTAGTGCATCAAAGGCTATTGAAATTCTTGAAGCATATGAAGGGACTTTAGAAGAAGATTATCCTCTGGAAAATGAACGGTGTGAACATGGTGAAATGCTTTTGTATAAGATCTCCTTGTTGGAAGAATGTGGGTTTTTCCAGAAAGCTCTTGAGGAGTTGCAAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCATATAAAGAACAGGAGGTCTCACTTCTGGTCAAGCTTGGTCGCTTAGAAGAAGGGGAGAAATTGTACCGCACATTACTTAGCATGAATCCCGACAATTATAGATATTATGAAGGCCTGCAAAAATGTGTTGGATTATATTCAGAAACTGGCCATTTTCCTCCTGATGAAATAGATCAGTTAGATGCCTTGTACAAAACACTTGAGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTTTTACAAGGTGACAAGTTTCGAGAAGCAGCAGATAGTTATATTAAGCCTCTCCTAACTAAGGGAGTCCCATCTCTTTTCTCCGATCTTTCTTCCTTATACAATCAACCTAGGAAGGCAGACGTATTGGAACAGATCATTCTTGAGTTAGAGGGTTCACTTAAGTCCACTGGTCAATACCCTGGATGGACGGAAAAAGAGCCACCTTCAACTCTGATGTGGACTTTGTTCTTCTTGGCTCAGCATTATGACAGACTGGGCCAATATGAAATTGCTCTTTCTAAAATTGATGAGGCTATTCATCACACGCCTACTGTCATTGATCTGTATTCAGTCAAGAGTCGGATACTAAAGCATGCTGGTGATTTGGTTGCTGCTGCTGGATTTGCAGATGAAGCTAGATGTATGGATCTTGCTGATCGTTATGTAAATAGTGAATGCGTTAAGCGCATGCTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAACTGCTGTATTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGGTACGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTGGCTCTAAAGAAATTTCTAGCTGTGGAGAAGCATCATGCTGATATCACAGAAGATCAATTTGATTTTCATTCATACTGCTTAAGGAAGATGACATTGCGTCAGTATGTGGAAATGCTTAAGTTCCAAGACCAATTGCATTCACATGCATACTTTCATAAAGCAGCTGCTGGAGCTATCAGATGTTATATCAAATTGCATGACTGTCCTCCGAAGTCGACAGCTGAGGAAGATAATGACATGTCTAAGTTGCTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAACAAAGAAAGGCAGAAGCTAGAGCTAAGAAAGAGGCAGAAGAAAAAAATGAAGAATCAAGTGCTGGTGGGGTATCAAAGTCTGGGAAACGGCATGCAAAATCTGCTGATCCTGACCCACGTGGTGAAAAATTGATGCAGGTTGAAGATCCCTTGTTGGAAGCCACAAAATACTTGAAATTGCTTCAGAAGAATTCACCTGACTCATTGGAGACACACTTTCTCTCATTCGAGTTATATATGAGAAAACAGAAAATTTTACTTGCCTTCCAGGCTGTTAAGTCGTTACTGAGGTTGGATGCTGAACATCCTGATTCTCATCGTTGTCTGATTAAATTCTTCAATAAGGTGGGATCCATGAATGCTCCTGTGACTGACAGTGAGAAACTTGTTTGGAGTGTCTTGGAAGCTGAGCGCCAAACTATTAGTCAGCTGCATGGGAAATCTCTGTTTGAGACAAATAATTCTTTCCTTGAAAAACATGAAGATTCTTTGATGCATAGAGCTGCTTTTGGGGAAATGTTGTATGTTTTGGATCCGAACAGAAGGCCTGAGGCTGTGAAGTTGATTGAAGGGTCAACAAACAACCTTGTGCCAAGAAATGGTGCGGTTGGACCGCTCGGGGAATGGAAACTTAAAGATTGTATTGCAGTTCATAAGCTTCTTGGAACAGTTCTTGTTGATGAGGATGCTGCATTAAGATGGAAAGTGCGTTGTGCCAAGTTTTTTCCATACTCCACCTACTTTGAGGGCAGTTGTAGCTCTGCCTTCAATCAGGTAGGCAAGAGCACTGAAAATGGTGAAAATGGGAGTTCTAACCATGTGGAATCCGCCCCCTCAAATGGGAAACTAGAGGCATTTAAAGATCTCGCCATCTGA 2682 0.4139 MGASLPPKEANLLKLIVKSYETKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKSDAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSSASKAIEILEAYEGTLEEDYPLENERCEHGEMLLYKISLLEECGFFQKALEELQKKELKIVDKLAYKEQEVSLLVKLGRLEEGEKLYRTLLSMNPDNYRYYEGLQKCVGLYSETGHFPPDEIDQLDALYKTLEQQYKWSSAVKRIPLDFLQGDKFREAADSYIKPLLTKGVPSLFSDLSSLYNQPRKADVLEQIILELEGSLKSTGQYPGWTEKEPPSTLMWTLFFLAQHYDRLGQYEIALSKIDEAIHHTPTVIDLYSVKSRILKHAGDLVAAAGFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHHADITEDQFDFHSYCLRKMTLRQYVEMLKFQDQLHSHAYFHKAAAGAIRCYIKLHDCPPKSTAEEDNDMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEESSAGGVSKSGKRHAKSADPDPRGEKLMQVEDPLLEATKYLKLLQKNSPDSLETHFLSFELYMRKQKILLAFQAVKSLLRLDAEHPDSHRCLIKFFNKVGSMNAPVTDSEKLVWSVLEAERQTISQLHGKSLFETNNSFLEKHEDSLMHRAAFGEMLYVLDPNRRPEAVKLIEGSTNNLVPRNGAVGPLGEWKLKDCIAVHKLLGTVLVDEDAALRWKVRCAKFFPYSTYFEGSCSSAFNQVGKSTENGENGSSNHVESAPSNGKLEAFKDLAI* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1782 893 SUPERFAMILY TPR-like 15 440 IPR011990 GO:0005515
Pvu5g1782 893 Gene3D - 2 503 - -
Pvu5g1782 893 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 878 - -
Pvu5g1782 893 Pfam TPR repeat 84 123 - -
Pvu5g1782 893 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Pvu5g1782 893 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Pvu5g1782 893 SMART tpr_5 77 110 IPR019734 GO:0005515
Pvu5g1782 893 SMART tpr_5 43 76 IPR019734 GO:0005515
Pvu5g1782 893 SMART tpr_5 380 413 IPR019734 GO:0005515
Pvu5g1782 893 MobiDBLite consensus disorder prediction 579 594 - -
Pvu5g1782 893 Gene3D - 505 725 - -
Pvu5g1782 893 PIRSF NAT_A 1 818 IPR021183 -
Pvu5g1782 893 Coils Coil 596 620 - -
Pvu5g1782 893 PANTHER BNAC02G23120D PROTEIN 10 878 - -
Pvu5g1782 893 MobiDBLite consensus disorder prediction 579 645 - -
Pvu5g1782 893 MobiDBLite consensus disorder prediction 606 622 - -
Pvu5g1782 893 MobiDBLite consensus disorder prediction 631 645 - -
Pvu5g1782 893 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1782 Pvu-Chr5 39594005 39608863 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1782 K20792 - gmx:100776968 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1782 5 39594005 39608863 Pvu5g1782 5 39594005 39608863 ECH
Pvu5g1782 5 39594005 39608863 Pvu10g1574 10 42124098 42137265 PCT