Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1574 ATGGGCGCTTCTCTGCCTTCCAAGGAGGCCAACCTCTTCAAGCTTATCGTCAAATCATATGAAACCAAACAGTATAAAAAGGGCCTCAAAGCTGCTGATACCATTCTGAAAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACACTAAATTGCATGGATCGTAAGTCCGAAGCATATGAACTTGTTCGTCAAGGATTAAAGAATGATCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGATCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGGCACAAATGCGAGATTTAACAGGCTTTGTCGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAATTGGATTGGATTTTCTGTAGCCCATCATTTGAACTCCAATGCATCCAAAGCAGTTGAGATTTTGGAAGCGTATGAAGGGACTTTGGAAGAGGATTATCCTCCAGAAAATGAAGGGTGTGAGCATGGGGAAATGCTTTTGTACAAGATCTCGTTGTTAGATGAATGTGGGTTTCTCGAGAGAGCACTTGAGGAGTTGCACAAAAAAGAATTTAAAATTGTTGATAAGCTTGCATACAAAGAACAGGAGGTGTCACTTTTAGTAAAGCTTGGTCGCTTAGAAGAAGGCGAAGCTTTGTACCGGGCATTACTTTCCATGAATCCTGATAATTATAGATACTATGAAGGACTCCAAAAGTGTGTTGGACTTTATTTAGAAGATGGGCAGTACTCGCCTGATCAAATAGACCAGTTAGATTCATTGTACAAAGCAATTGTACAACAATACAAGTGGTCTTCCGCTGTTAAGAGAATACCTCTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCCTAACCAAGGGAGTTCCCTCTCTATTCTCTGATCTATCATCTTTGTACAATCACCCTGGGAAGGCAGATATTTTGGAACAACTTATTCTTGAGTTAGAGCAGTCAATTAGGATGTCAGGCCAATATCCTGGAGGGACGGACAAAGAACCCCCTTCAACTCTTATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGACGGGGTCAATTTGAAATTGCTCTTTCTAAAATTGATGAAGCTATAGAACATACACCCACAGTCATTGATCTATATTCTGTCAAGAGTCGTATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAGTGTGTTAAGCGGATGTTGCAGGCTGATCAGGTGTCTTTGGCCGAAAAAACTGCTGTATTGTTCACAAAGGATGGGGATCAACACAATAACCTTCATGATATGCAGTGCATGTGGTATGAGCTTGCCTCGGGCGAAAGTTATTTTCGCCAGGGTGATCTTGGACGGGCACTAAAAAAATATTTAGCAGTGGAGAAGCATTATGCTGATATCACGGAGGACCAATTTGATTTTCATTCTTACTGCTTACGGAAAATGACTTTGCGGACTTATGTGGAAATGCTGAAATTTCAAGACCAATTGCATTCACATTCATATTTTCACAAAGCAGCAGCTGGGGCTATCAGATGCTATATTAAGTTGTATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCCAAAAAAGAGGCAGAAGAAAAGAATGAAGAGTTAAGTTCAAGTGGGGTATCGAAGTCTGGGAAACGGCATGTAAAACCTGTTGATCCTGATCCAAATGGGGAGAAGTTGCTGCAGGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACACACTTGCTCTCTTTTGAATTATATACAAGGAAACAAAAGACTTTGCTTGCTTTTCAGGCTGTGAAGCAGTTACTGAGATTGGACTCTGAACACCCTGATTCTCATCGTTGCTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGCAACTGATAGTGAGAAACTGATTTGGAGCGTCTTAGAGGCTGAGCGCCCAAATATTAGCCAGGTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTGTCCTTGAAAAACACAAAGATTCTTTGATGCATAGAGCAGCTTTTGTAGAAGTCTTGCACATTTTAGATTCAAACAGAAAATCTGAGGCTGTAAAGTTCATTGAAGAGTCAACAAATAACACTGTGCCCAGAAATGGAGCACTTGGACCAATCAGGGAATGGAAACTTAAAGACTGTATTGCGGTTCACAATCTTCTTGGAACAGTTCTTGCTGATCAGGATGCTGCATTGAGATGGAAGGTGCGATGTGTGGATTACTTTCCATATTCTACATACTTTGAGGGAAGGCACAGCTCTGCCTCTCCCAACTCAGCCTTCAACCAGTTACGTAAGAACTCAGAAAGTGAGAGTAGTAACCACATCACATCAAACGGGAAAGTAGAGGCATTTAAAGATCTCACTATCTGA 2679 0.4095 MGASLPSKEANLFKLIVKSYETKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDYPPENEGCEHGEMLLYKISLLDECGFLERALEELHKKEFKIVDKLAYKEQEVSLLVKLGRLEEGEALYRALLSMNPDNYRYYEGLQKCVGLYLEDGQYSPDQIDQLDSLYKAIVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEQSIRMSGQYPGGTDKEPPSTLMWTLFLLAQHYDRRGQFEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKYLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHSYFHKAAAGAIRCYIKLYDSPPKSTAEEDDNMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEELSSSGVSKSGKRHVKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKTLLAFQAVKQLLRLDSEHPDSHRCLIKFFHKVGSMNAPATDSEKLIWSVLEAERPNISQVHEKSLFEANNSVLEKHKDSLMHRAAFVEVLHILDSNRKSEAVKFIEESTNNTVPRNGALGPIREWKLKDCIAVHNLLGTVLADQDAALRWKVRCVDYFPYSTYFEGRHSSASPNSAFNQLRKNSESESSNHITSNGKVEAFKDLTI* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1574 892 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 872 - -
Pvu10g1574 892 SUPERFAMILY TPR-like 21 262 IPR011990 GO:0005515
Pvu10g1574 892 MobiDBLite consensus disorder prediction 854 879 - -
Pvu10g1574 892 Pfam TPR repeat 84 123 - -
Pvu10g1574 892 MobiDBLite consensus disorder prediction 579 646 - -
Pvu10g1574 892 PIRSF NAT_A 1 818 IPR021183 -
Pvu10g1574 892 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Pvu10g1574 892 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Pvu10g1574 892 PANTHER BNAC02G23120D PROTEIN 10 872 - -
Pvu10g1574 892 SMART tpr_5 43 76 IPR019734 GO:0005515
Pvu10g1574 892 SMART tpr_5 77 110 IPR019734 GO:0005515
Pvu10g1574 892 SMART tpr_5 380 413 IPR019734 GO:0005515
Pvu10g1574 892 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Pvu10g1574 892 Gene3D - 2 503 - -
Pvu10g1574 892 Gene3D - 505 726 - -
Pvu10g1574 892 MobiDBLite consensus disorder prediction 606 622 - -
Pvu10g1574 892 Coils Coil 596 624 - -
Pvu10g1574 892 MobiDBLite consensus disorder prediction 579 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1574 Pvu-Chr10 42124098 42137265 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1574 K20792 - gmx:100820094 1642.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1574 10 42124098 42137265 Pvu10g1574 10 42124098 42137265 ECH
Pvu5g1782 5 39594005 39608863 Pvu10g1574 10 42124098 42137265 PCT