Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1778 ATGGAGTTGATTTCAGGTCTACCAGAGGACGTTGCCCGAGACTGTTTGATTAGGGTTCCGTACGAGCAACTCGCGGCGGTGGCATCCGTATGCAAAGGGTGGAGCTCCGAGATTCACTCGCCGGAGTTTCACCGGCGGAGGAGAACCACAAAACACGCACAGAAAATCCTTGTCACGGTTCAATCCAAAATAGAATCCGAAAAGGCACGAACCGGCTTGCTTGCGAAGGCCTCTGCGAATCCGGTTTATCGGCTGAGCGTGTTCGAACCGGAAACGGGTCTGTGGAGCGAGTTGCCCTTGGGACCCGAACTCGCTTCCGGGTTACCCATGTTCTGTCAGATAGCGGGTGTCGGGTACGAGCTTGTCGTTATGGGCGGGTGGGACCCGGATTCGTGGAAAGCGTCGAATTCGGTTTTTATCTACAACTTTCTGTCGGCCAAGTGGCGGCGTGGGGCCGACATGCCGGGTGGGCCCAGGACGTTTTTCGCGTGCGCGTCTGATCAGGATCATACGGTGTACGTAGCGGGCGGGCACGACGAGGAGAAGAACGCGCTGAAGTCAGCGCTTGCGTACGACGTGGCGAGCGACGTGTGGGTCCCGCTGCCGGAGATGTCGCGCGAGCGCGACGAGTGCAAGGCCGTGTTCCGCCGCGGCGCGCTCCGCGTCGTGGGTGGCTACTGCACGGAGATGCAGGGGCGGTTCGAGCGGAGCGCGGAGGTCTTCGACGTGGCCTCGTGGAAGTGGGGCCCGTTGGAGGAGGAGTTCTTGGATGCGGCCGCGTGTCCTCGAACATGCGTGGACGGTGGGGATGGTAAGGAAGGGGAAATGTACATGTGCCGCGGCGGCGACGTGGTGGTGTTGCAGGGAGAGACGTGGCGGAAGGTGGCGAAGGTGCCGCGTGAGATTCGGAACGTTGCGAGCGTGGGAGTGTGGGAAGGGAGCATGTTTGTTATTGGGTCGAGTGGGTTTGGGGAACCGCATATGGGCTTTGTGCTGGATCTGAAGAATGGGGCTTGGGCCAAGGTTGTGAGCCCGGAAGAATACACTGGGCATTTGCAATCTAGTTGTATTTTGGAAATTTAG 1083 0.5946 MELISGLPEDVARDCLIRVPYEQLAAVASVCKGWSSEIHSPEFHRRRRTTKHAQKILVTVQSKIESEKARTGLLAKASANPVYRLSVFEPETGLWSELPLGPELASGLPMFCQIAGVGYELVVMGGWDPDSWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACASDQDHTVYVAGGHDEEKNALKSALAYDVASDVWVPLPEMSRERDECKAVFRRGALRVVGGYCTEMQGRFERSAEVFDVASWKWGPLEEEFLDAAACPRTCVDGGDGKEGEMYMCRGGDVVVLQGETWRKVAKVPREIRNVASVGVWEGSMFVIGSSGFGEPHMGFVLDLKNGAWAKVVSPEEYTGHLQSSCILEI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1778 360 PANTHER OS02G0208700 PROTEIN 1 360 IPR044595 GO:0080037|GO:2000762
Pvu5g1778 360 Gene3D - 68 353 IPR015915 GO:0005515
Pvu5g1778 360 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
Pvu5g1778 360 SUPERFAMILY Kelch motif 80 340 IPR015915 GO:0005515
Pvu5g1778 360 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 360 - -
Pvu5g1778 360 SMART kelc_smart 171 218 IPR006652 GO:0005515
Pvu5g1778 360 SMART kelc_smart 120 168 IPR006652 GO:0005515
Pvu5g1778 360 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Pvu5g1778 360 Pfam Kelch motif 169 205 IPR006652 GO:0005515
Pvu5g1778 360 Gene3D - 1 58 - -
Pvu5g1778 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1778 Pvu-Chr5 39568771 39570480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1778 - - gmx:100786398 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1778 5 39568771 39570480 Pvu5g1778 5 39568771 39570480 ECH
Pvu5g1778 5 39568771 39570480 Pvu10g1573 10 42111014 42112666 PCT