Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1573 ATGGAGTTGATTTCGGGTCTACCAGAGGACGTAGCACGGGACTGTCTCATTCGGGTTTCGTACCAGCAGTTCCCCACGGTGGCGTCAGTGTGCAAGCTCTGGAAATCGGAGATTCTTTCGCCGGAGTTCCACCGGCAACGGCGTGGCACGAACCACGCGCAGAAGCTCATAGCGATGGTTCAGGCTCGCGACGAGCCGGGAGCTGGTTCGACCAAGCGAGTGACGAACCCGGTTTACCGTCTCAGCGTGTTGGAACCGGAAACGGGTCACTGGGCCGAGCTGCCACAGCCGCCGGAGTTTTCTTCCGGGTTGCCTATGTTCTGTCAGTTAGTGAGTGTCGGGTACGATCTTGTCGTGTTGGGCGGGTTGGACCCGAATTCGTGGAAAGCATCGAGTTCTGTGTTTGTGTACAATTTTTTGTCGGCGAATTGGCGGCGCGCCGCGGATATGCCGGGTGGGCCGCGCACGTTTTTCGCTTGCGCGTCGGATTCTAAAGGGACGGTTTTTGTCGCCGGAGGACACGACAACGAGAAGAACGCGCTGCGTTCGGCTCTGGCCTATGATGTTGCCTCGGACCGGTGGGTTTCGCTTCCCGACATGGCGGCGGAGCGCGACGAGTGCAAGGGCGTTTTCCGCCGCGGTAGGTTCGTCGTGGTCGGGGGCTACCCGACGGAGACGCAGGGAAGGTTCCGGAAGAGCGCGGAGGCGTTCGATCCTGCCACGTTGCGGTGGGGCGAAGTTAAAGAGGAGTTTCTGGATTGCGCCACGTGTCCGAGGACGTTAGTGGACGGTGGAGATGGCGAGACGGTGTTTTTGTGCAGTGGCGGGGAATTGATCTCGCTTCGAGGCGACACGTGGCAGAAGATGTCGACGGTGCCGGGAGAGATACGCAACGTGGCGTACGTTGGGGCGTTTGATAGGACGCTGGTGTTGATTGGATCCAGCGGCTACGGTCAAGTCCACGTGGCTTTTGCTTTTGATTTTGAGAGTTGCAATTGGAGGAAAGTGGCAAGCCTAGAGGGGTTCATGGGCCATGTTCAAACCGGCTGTGTTTTGGAGATTTAG 1065 0.5859 MELISGLPEDVARDCLIRVSYQQFPTVASVCKLWKSEILSPEFHRQRRGTNHAQKLIAMVQARDEPGAGSTKRVTNPVYRLSVLEPETGHWAELPQPPEFSSGLPMFCQLVSVGYDLVVLGGLDPNSWKASSSVFVYNFLSANWRRAADMPGGPRTFFACASDSKGTVFVAGGHDNEKNALRSALAYDVASDRWVSLPDMAAERDECKGVFRRGRFVVVGGYPTETQGRFRKSAEAFDPATLRWGEVKEEFLDCATCPRTLVDGGDGETVFLCSGGELISLRGDTWQKMSTVPGEIRNVAYVGAFDRTLVLIGSSGYGQVHVAFAFDFESCNWRKVASLEGFMGHVQTGCVLEI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1573 354 Gene3D - 44 348 IPR015915 GO:0005515
Pvu10g1573 354 Pfam Kelch motif 165 200 IPR006652 GO:0005515
Pvu10g1573 354 Pfam F-box domain 4 45 IPR001810 GO:0005515
Pvu10g1573 354 Pfam Kelch motif 105 155 - -
Pvu10g1573 354 PANTHER OS02G0208700 PROTEIN 1 354 IPR044595 GO:0080037|GO:2000762
Pvu10g1573 354 SMART kelc_smart 116 164 IPR006652 GO:0005515
Pvu10g1573 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Pvu10g1573 354 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 354 - -
Pvu10g1573 354 SUPERFAMILY F-box domain 3 56 IPR036047 GO:0005515
Pvu10g1573 354 SUPERFAMILY Kelch motif 76 340 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1573 Pvu-Chr10 42111014 42112666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1573 7 209 Miscellaneous Gene Families AT4G33900 26.991 5.14e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1573 - - gmx:100796602 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1573 10 42111014 42112666 Pvu10g1573 10 42111014 42112666 ECH
Pvu5g1778 5 39568771 39570480 Pvu10g1573 10 42111014 42112666 PCT