Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1702 ATGACCACCCTCCATAGAACCATCCTCATTGCCCACAAGCTCCACCTTCGCTACCCCAAATGCATTTTCCCACCTCTACTTTCCCACTACTCCGCAACGGCGGATTCCTCCGAAGCCGACCACACAGACAAACCAACAAACGAAACCCCCACCACCAGTTGGAGCAGATATGGAAACATCTACGCCCGCCCAGTTGTGCAGCAGAGCGATCACAGCGACGGAGATGAAAACCCTAGCGGTTTGAGGGGAAATGATGTAACAGTGGTGAAGAAAAAAGGGAAGGTGAAAGCTCAGTGGGTGTGCTCCGATTGTGGGCACACGACGGGGAAATGGTGGGGGACATGCCCGGAATGCGAAGTAACTGGCACAATGCAAGAGTTTCATGAGAGCAAATTAACTGACAAACCCAGGGGGGGGTTAGCCATTACCGAGGACGCAGTGGGCTCGTGGCTCCCACGACGACTCGAAGAGTTGCGCCCCGTCAAGTTGGAAGAGGTGAACCGTGGATTCAATCACGACAAATGGAGAATTCCTTTGTCTGGTTCCCTCGGAAATGAAATTTCTACGGTGCTTGGTGGAGGTCTTGTACCAGGTTCTTTAACTTTAGTCGGTGGTGATCCTGGTATTGGGAAAAGTACTCTGTTGTTGCAGATTTCAGCAATGATAGCAAATGAATGCAGTGATGGTGAAACACCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTAAGCAAATTTGTGCTAGAGCTGATCGCCTTGGGATTATGTCCAATATTTATTTATATTCAAGTACTGATATTGAGGACATATTGAAGAAAACTCATGCTCTATCCCCTTGTGCTCTGGTGGTTGATTCAATACAAACTGTTTACTTGAATACAGTTATAGGAAGTGCTGGAGGGGTTACGCAGGTGAAGGAATGTACTGCAGCTTTGATGCGATTTGCTAAAACAACTAACATCTCAGTTATTTTGATTGGACATGTGACCAAATCTGGAGAGATAGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTCGTTTTGTATATGGAAGGCGAGAAGTACTCTCCCTATCGAATGCTTCGAGCAGTGAAAAATCGCTTTGGTTCCACCGATGAGCTTGCAGTTCTTGAGATGTCACAGTCGGGACTCCAGGTTGTTTCAAATGTTAGTGAAATGTTTCTCACTCAACAACACTCTGATTCAAATGTTTTAGCTGGACTTGCTATTGCTGTACTAATGGATGGTACAAGAACTTTTTTAGTTGAAATTCAGGCACTTTGCCTTGCACATTGCCCAGTTTCGAGTTCACAATCCAATGGGATCACGCCAAACAAAGCTAATATTATTAAATGTGTACTTATAAAGCAAGCAGGTCTTCATCTCCAAGATAATGCCGTGCTTTTGAATGTTGTTAGCGGATTCACAGTGACAGAAACTGCTGGAGATCTTGCAATGGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCAGAGGGGACTGCTTTCATTGGTGAAGTTGGCCTTAGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTTAACACATTGGCGAAGTTGGGTTACAAAATGTGTGTAGTACCAAAGCAAGCGGAAAAGCTTTTAGAAACCGAAGGTCTAGAAAAAATGAAAGTTGTAGGTTGCAAGGATCTGAAAGAGGTCATTAACGCTGTATTTAGTAGATAG 1722 0.4506 MTTLHRTILIAHKLHLRYPKCIFPPLLSHYSATADSSEADHTDKPTNETPTTSWSRYGNIYARPVVQQSDHSDGDENPSGLRGNDVTVVKKKGKVKAQWVCSDCGHTTGKWWGTCPECEVTGTMQEFHESKLTDKPRGGLAITEDAVGSWLPRRLEELRPVKLEEVNRGFNHDKWRIPLSGSLGNEISTVLGGGLVPGSLTLVGGDPGIGKSTLLLQISAMIANECSDGETPPVVYVSGEESLKQICARADRLGIMSNIYLYSSTDIEDILKKTHALSPCALVVDSIQTVYLNTVIGSAGGVTQVKECTAALMRFAKTTNISVILIGHVTKSGEIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSQSGLQVVSNVSEMFLTQQHSDSNVLAGLAIAVLMDGTRTFLVEIQALCLAHCPVSSSQSNGITPNKANIIKCVLIKQAGLHLQDNAVLLNVVSGFTVTETAGDLAMAAAICSSFLEFPIPEGTAFIGEVGLSGELRMVPRIDKRVNTLAKLGYKMCVVPKQAEKLLETEGLEKMKVVGCKDLKEVINAVFSR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1702 573 ProSiteProfiles RecA family profile 1. 173 329 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pvu5g1702 573 Pfam Rubredoxin metal binding domain 99 126 IPR041166 -
Pvu5g1702 573 TIGRFAM sms: DNA repair protein RadA 94 564 IPR004504 GO:0003684|GO:0005524|GO:0006281
Pvu5g1702 573 PRINTS DNA repair protein radA signature 101 125 - -
Pvu5g1702 573 PRINTS DNA repair protein radA signature 189 217 - -
Pvu5g1702 573 PRINTS DNA repair protein radA signature 285 309 - -
Pvu5g1702 573 PRINTS DNA repair protein radA signature 324 352 - -
Pvu5g1702 573 PRINTS DNA repair protein radA signature 359 385 - -
Pvu5g1702 573 PRINTS DNA repair protein radA signature 435 458 - -
Pvu5g1702 573 Gene3D - 397 573 IPR014721 -
Pvu5g1702 573 Pfam AAA domain 191 333 - -
Pvu5g1702 573 Gene3D - 185 388 IPR027417 -
Pvu5g1702 573 SMART AAA_5 197 355 IPR003593 -
Pvu5g1702 573 PANTHER DNA REPAIR-LIKE PROTEINRADA 4 573 - -
Pvu5g1702 573 PANTHER DNA REPAIR PROTEIN RADA 4 573 - -
Pvu5g1702 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 380 IPR027417 -
Pvu5g1702 573 MobiDBLite consensus disorder prediction 34 85 - -
Pvu5g1702 573 Pfam Subunit ChlI of Mg-chelatase 456 542 - -
Pvu5g1702 573 SUPERFAMILY Ribosomal protein S5 domain 2-like 366 571 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1702 Pvu-Chr5 39019423 39028096 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1702 K04485 - gmx:100791181 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1702 5 39019423 39028096 Pvu5g1702 5 39019423 39028096 ECH
Pvu5g1702 5 39019423 39028096 Pvu10g1495 10 41534859 41542937 PCT